Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17483g00001 ATGGGAGGTGACAGTGCCGTTGAGGAATCGGAAGGGGTCAACGTCAACATCAATGTTCGCTGCTCCAACGGTTCCAAGTTTTCGGTTCAGATTACCGTCGATTCCACTGTCCTTTCCTTCAAGGATCTCGTCGCTCGTAACTGCGACATCCCCGCGGAACAACAGCGCCTCATTTACAAGGGTCGCATCTTGAAGGACGATCAAACCCTCCGAAGCTACGGTTTGGAGGCAGATCACACTGTTCATTTGGTTCGTGGCTTTGCACCTGCCAATGCATCTGGTGGGACTAATACTAGTAGCACCAATACCAATACCACAACAAATAATGCCAGAGGTGCTGGTGCGAATGAAGGTGGGGGTTTAGGAGGGCATGGTTTTGGAGCTTCACTATTCCCTGGACTAGGTATCAATGGGACTGGGGGCAATGGTTTATTTGGCGAGGGATTTCCTGATCTTGAACAGATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATAATGAACTCACCTGCCATGCAGAATCTAATAAGTAATCCTGAGATAGTGCGGAGTCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATTCTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGATAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACGATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGCCATGCCAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTGCTGGTTCTCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTTTACTGGAACTGGAGGTGCTCAAAATAACCCCATAAGGTCATCAGCCACTGGTGGGGAAGCCAGGCCTCAAGGTCCTACTGGCTTAGGAGGTCTTGGTGTGCCAGACCTTGAAAGCATGCTGGGTGGAAGTGCTATGCCAGATGCTGCTTTAATGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATTCTTGGTGCTAATACTGAGCAGCGTGGTATGCCTGATTTAAATTCTCTTAGAGATGTAATGCAAAATCCAGAATTCCTTCGCTTGTTTTCTTCACCCGAGACATTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACGCAGGGAATCTGGTCAAACCGGCGGCGGCGCTGGACCATTGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGACCCACCGGAGCAATTGTATGCCACCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACCCAAGAAAACATAAGGGCTCTTATTGCTACATCGGGGAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGCAAGCTTCATACATAA 1638 0.4646 MGGDSAVEESEGVNVNINVRCSNGSKFSVQITVDSTVLSFKDLVARNCDIPAEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFAPANASGGTNTSSTNTNTTTNNARGAGANEGGGLGGHGFGASLFPGLGINGTGGNGLFGEGFPDLEQMQQPFISNPNLMREIMNSPAMQNLISNPEIVRSLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTHGGHARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSFTGTGGAQNNPIRSSATGGEARPQGPTGLGGLGVPDLESMLGGSAMPDAALMTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTRRESGQTGGGAGPLNNLGLEMLSSMFGGLGAGSLAVPNRSNDPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGKLHT 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17483g00001 545 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Mupr17483g00001 545 SMART ubq_7 15 86 IPR000626 GO:0005515
Mupr17483g00001 545 FunFam Ubiquitin domain-containing protein DSK2b 483 541 - -
Mupr17483g00001 545 Gene3D - 188 245 - -
Mupr17483g00001 545 CDD Ubl_Dsk2p_like 15 87 - -
Mupr17483g00001 545 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Mupr17483g00001 545 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Mupr17483g00001 545 PANTHER UBIQUILIN 15 537 IPR015496 -
Mupr17483g00001 545 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Mupr17483g00001 545 SMART CBM 192 231 IPR006636 -
Mupr17483g00001 545 SMART CBM 400 435 IPR006636 -
Mupr17483g00001 545 SMART CBM 138 179 IPR006636 -
Mupr17483g00001 545 SMART CBM 344 397 IPR006636 -
Mupr17483g00001 545 CDD UBA_PLICs 500 538 - -
Mupr17483g00001 545 FunFam Ubiquitin domain-containing protein DSK2b 189 245 - -
Mupr17483g00001 545 Pfam UBA/TS-N domain 500 536 IPR015940 -
Mupr17483g00001 545 Gene3D - 482 542 - -
Mupr17483g00001 545 Gene3D - 4 99 - -
Mupr17483g00001 545 MobiDBLite consensus disorder prediction 267 359 - -
Mupr17483g00001 545 SUPERFAMILY Ubiquitin-like 13 102 IPR029071 -
Mupr17483g00001 545 SMART uba_6 500 538 IPR015940 -
Mupr17483g00001 545 MobiDBLite consensus disorder prediction 267 340 - -
Mupr17483g00001 545 FunFam Ubiquitin domain-containing protein DSK2b 12 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17483g00001 Mupr-Chr17483 8666 15925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17483g00001 15 84 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 7.72e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17483g00001 K04523 - gmx:100776447 875.159