Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17449g00001 GCCCTTCCTAACACTCCAAAACTGCCCTCCTTTCCATCTTCTTCTTCTCTCTCTTTCTCTCACCTATCCAATACCCTCAAAACTCTCTCTCTCACTACACAAGTTCTTCAAACGCTAACACTAGAGATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTCTAGGCCTCAACTTCCCCATGAATACCACAAATCCTCAACATCTCAGTCTCTTGTCTTCCTCTACTCAGTCCTCTTCCCCTTCTGGTTGCAATCCCCAGAAACCCGCTTGGAACGAGGTTTTCGCTTCTTCGGATCGAAACTCCGACACATGCAGAGGCGAAACACGATCGTTCCTGCGCGGAATCGACGTGAATCGGTTACCTTCGGCCGTAGACTGCGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTTAGCGGAAAACGAAGCGAGAGAGAACCCAACGGCGAAGAACACGACATGGACAGAGCGTATTCTCGAGGAATCAGCGACGAAGAAGATGCTGAAACCGCAAGGAAAAAACTTAGACTCTCCAAAGACCAATCAGCTATTCTCGAAGAAAGCTTCAAAGAGCACAATACCCTGAACCCCAAGCAAAAGTTGGCGCTGGCAAAGCAGCTAGGCCTTCGACCAAGACAAGTAGAAGTGTGGTTCCAGAACAGAAGGGCGAGGACAAAGCTGAAGCAAACTGAGGTGGACTGCGAGGTGTTAAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAAAAAGAAGTTCAGGAGCTAAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCACCCACGACACTCACTATGTGCCCTTCTTGTGAACGTGTGGCCGTTCCGTCCTCAGCCGTTGATGCTGCACCGCGTCATCATCATCATCCCATGGCCCAGGCCCATCCTCGGCCCATACCCATTGGCCCGTGGGCTTCGGCGGCTCCCATTTCGCACCGGCCTTTTGATGCTTTCCGGCACTGA 1014 0.5089 ALPNTPKLPSFPSSSSLSFSHLSNTLKTLSLTTQVLQTLTLEMMVQKEDLGLSLGLNFPMNTTNPQHLSLLSSSTQSSSPSGCNPQKPAWNEVFASSDRNSDTCRGETRSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSGKRSEREPNGEEHDMDRAYSRGISDEEDAETARKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAAPRHHHHPMAQAHPRPIPIGPWASAAPISHRPFDAFRH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17449g00001 337 ProSitePatterns 'Homeobox' domain signature. 207 230 IPR017970 GO:0000981|GO:0006355
Mupr17449g00001 337 FunFam Homeobox-leucine zipper protein 18 163 237 - -
Mupr17449g00001 337 Pfam Homeobox associated leucine zipper 232 266 IPR003106 GO:0006355|GO:0043565
Mupr17449g00001 337 PRINTS Lambda-repressor HTH signature 203 212 IPR000047 GO:0003677
Mupr17449g00001 337 PRINTS Lambda-repressor HTH signature 212 228 IPR000047 GO:0003677
Mupr17449g00001 337 MobiDBLite consensus disorder prediction 147 176 - -
Mupr17449g00001 337 ProSiteProfiles 'Homeobox' domain profile. 172 232 IPR001356 GO:0003677
Mupr17449g00001 337 SMART halz 232 275 IPR003106 GO:0006355|GO:0043565
Mupr17449g00001 337 Pfam HD-ZIP protein N terminus 44 150 IPR006712 GO:0005634
Mupr17449g00001 337 Pfam Homeodomain 176 230 IPR001356 GO:0003677
Mupr17449g00001 337 Coils Coil 231 268 - -
Mupr17449g00001 337 MobiDBLite consensus disorder prediction 131 146 - -
Mupr17449g00001 337 Gene3D - 180 230 - -
Mupr17449g00001 337 SUPERFAMILY Homeodomain-like 165 233 IPR009057 -
Mupr17449g00001 337 CDD homeodomain 176 233 IPR001356 GO:0003677
Mupr17449g00001 337 SMART HOX_1 174 236 IPR001356 GO:0003677
Mupr17449g00001 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 70 305 - -
Mupr17449g00001 337 MobiDBLite consensus disorder prediction 126 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17449g00001 Mupr-Chr17449 1875 3521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17449g00001 43 336 Homeobox Transcription Factor Family AT4G16780 65.878 6.39e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mupr17449g00001 HD-ZIP_N 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17449g00001 K09338 - gmx:100813367 498.434