Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17444g00001 ATGGCGACTCATCTACCCGACCACTTCAAGTGTCCAATTTCCCTCGAAATAATGTCAGACCCCGTCATCCTCTCTTCCGGCCACACCTTCGACCGCTCCTCAATCCAACGCTGGCTCGACGCTGGACACCGTACATGTCCAATTACCAAATTGCCCCTCCACGACCACCCTTCCCTCATCCCCAACCACGCTCTCCGAAGCTTAATCTCCAACTACACCCTCCTCTCCCCTCTCCACCAAACCATTTCCCAATCCCAAACCCTAATCTCAACCCTCGCCTCTCATTCTTCATCTTCCGATTCCAAAATTGATTCCCTCCGCCACCTCACGCACCTCTCCAAGCGCGACTCCGCCTTCCGCCGCCTCCTCGCCGACTCCGGCGCCGTCCCCGCCCTCCTCGCCGCCGTCGACGACCCCCTCCTCCAGGAGAGCGCCCTCCCGCTCCTCCTCAACCTCACTCTCGACGACGACTCCAAGGTCGGCCTCGTCGCCGAGGGCGTCGTCGCGCGCGTCGTCGCCGTTCTCCTCCGCGGCGCCTCGCCCGACTGCCGCGCCGTCGCGGCCACCATCGTCACCAGCCTCGCCGTCGTCGAGGTCAACAAGGCCACTATCGGCGCCTTCCCGGCGGCGATCGCGGCGCTCGTGGCGATTCTCCGCGATGGCAAGGGGCGGGAGAGGAAGGAGGCGGCCACCGCGCTCTACGCGCTCTGCTCTTTTCCGGATAACCGGAGAAGGGCGGTGGATTGTGGCGCGGTGCCGATTCTGCTCAGAAACGTTGAAATTGGGCTCGAAAGAGGCGTTGAGGTAATTGGCGTTTTGTCCAAGTGTAAGGAAGGGAGAGAGCAAATGGAAGCTTATAACGGTTGTGTTCAGATTCTGGCTCGCGTTTTGAGGAACGGAAGCTCAAGGGGGATTCAGTATGCGCTTTTGGCACTCACTTCGCTTTGTTGTTATAGTCAGCGAATGGTTCTGGTGGCTCTGGATGAAGGGGTTCTGGAAGCTTCTCTCGGGTTCGTGGTAGATGATAATGAGAAAGTGAGGAGGAATGCGCGAAATTTGATTCGGTTTCTGCGTGGCAACAATAGCCACAATTGGGTGAGCAAAACAAATGTTGTCTTATCCAATGACGGCATTTTGCAGAGTCGTCTCAGCCTCTCAGTGGCTGAAGTTGACTTGGATTTGTTTTATATTGGGAACATTAAAATATTTTAA 1212 0.5693 MATHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLHDHPSLIPNHALRSLISNYTLLSPLHQTISQSQTLISTLASHSSSSDSKIDSLRHLTHLSKRDSAFRRLLADSGAVPALLAAVDDPLLQESALPLLLNLTLDDDSKVGLVAEGVVARVVAVLLRGASPDCRAVAATIVTSLAVVEVNKATIGAFPAAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVDCGAVPILLRNVEIGLERGVEVIGVLSKCKEGREQMEAYNGCVQILARVLRNGSSRGIQYALLALTSLCCYSQRMVLVALDEGVLEASLGFVVDDNEKVRRNARNLIRFLRGNNSHNWVSKTNVVLSNDGILQSRLSLSVAEVDLDLFYIGNIKIF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17444g00001 403 CDD RING-Ubox_PUB 6 53 IPR045210 -
Mupr17444g00001 403 Gene3D - 210 361 IPR011989 -
Mupr17444g00001 403 FunFam RING-type E3 ubiquitin transferase 69 261 - -
Mupr17444g00001 403 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Mupr17444g00001 403 PANTHER U BOX DOMAIN-CONTAINING 6 357 - -
Mupr17444g00001 403 Gene3D - 80 209 IPR011989 -
Mupr17444g00001 403 SMART arm_5 116 154 IPR000225 GO:0005515
Mupr17444g00001 403 SMART arm_5 155 196 IPR000225 GO:0005515
Mupr17444g00001 403 SMART arm_5 276 317 IPR000225 GO:0005515
Mupr17444g00001 403 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Mupr17444g00001 403 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Mupr17444g00001 403 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Mupr17444g00001 403 SUPERFAMILY ARM repeat 86 357 IPR016024 -
Mupr17444g00001 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Mupr17444g00001 403 SUPERFAMILY RING/U-box 4 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17444g00001 Mupr-Chr17444 1279 5397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17444g00001 1 359 U-box Gene Family AT4G21350 60.541 3.16e-144 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17444g00001 - - gmx:100813349 539.65