Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17428g00001 ATGGTACTTCCCTCCCCTGCCAAAATACTAGTTGGCCTCTCCTTAGACCCTGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCAAATGACACCATTGTGGCCGTGCATGTTCTTGTTGCTGCGGATAAGAAGAAGCGTGTCTCGGTCAGAAGAAGGCAATCACAACTAAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAAACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCCAGGGTGGCACTCAATTCCACAGTTGGGGAAGGTTTAGTGGAGGAAGCCAAGTCCATCGATGCTGACTTTCTTCTAGTTCATGGCTCAAGAAACCGAGCAAATAAGTATGAACCGAATGATGTAATAATAGTTATCAATTTTCTTTACGAAGATCATGCACGACAAACCCGAATTGGAACTTCTAAAGGAATTACCAAGTATTGCTTTGAGCATGCACATGAAGGGTGTACGATGATCTCAGTTGGGAGACGTACAAAGGCAGATCAAAGTACCAACTCAAACTCAAAACGTTTTCAAGATAATAAACGACCAAGTTCAAGATTGTTAAAGAAGGATAAGCAATGTGACAAGGGTGCCTCCCCTGTTCTGGAGGATTATATCTCAGGAACCAAAGCACAGAACCGTTCACCAAGAACGGTACTAGATTCTCTAGAGGGACAATCAAACAGCACTGAAGATGATACCTTCAGCACTAGGGTCTCAAGCACCACGTATACCCCATCATTGGATTCTAAGATTAAGAGGCGATCCAAGATAAGAAAATCACAGTTGTCATTCAGGTTCATTGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTTAACATGTCTAAAAATGAAAAGCCTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATATCCCATGCTACCAACGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTACTCAGAAGTATACAGAGGTGATCTTTCAGATGGACGAACTATTGCTGTGAAAAGGTTGGCCAAGGATAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTGTGGAGTTGGGTGTTATTGGACATGTGTGCCATCCTAATACTGCAACTTTAGTAGGATGCTGCATTGAAAATGGACTATATCTGATTTTCAATTACTCTCAAAATGGAAATTTGGCAACTGCATTGCATGGTAAAGGAGGAGATTCACTAGACTGGCCAATCAGATACAAAATTGCCATTGGTATTGCAAAGGGTCTGCATTATCTTCATATGTGTTGCAAACACCGAATAATTCATCGTGACATTAAAGCCTCTAATGTTCTTCTGGGTCCTGATTATGAACCCCAGATTACCGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCACGCTGTGATCCCCGTAGAGGGCACGTTCGGATACTTAGCGCCAGAGTACTTTATGCACGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCTAAGCAAAACCTTCTCTTATGGGCAAAGCCTCTAATGGAATCAGGGAATATTGCTGAGCTAGCTGATCCAAGATTGGAAGGTAAATATGATGGAGAACAACTGTATAGGGTAATTCTAACGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGCGAGGTGTTAGAGCTGCTAACTAGTGGCCAAGACAGTGAGAATGGAAAGAGCTGGAGGATCCCAAAGTTCACTTCTGATGAATTAGATGATTACTCTATGGTCTGTGGTAGGAGTGAAGTCATAAGCATTAGATATGAGGTTGGTTCTTTATTTTTGTAA 1896 0.4251 MVLPSPAKILVGLSLDPDDSKELLSWAIRVLANPNDTIVAVHVLVAADKKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGEGLVEEAKSIDADFLLVHGSRNRANKYEPNDVIIVINFLYEDHARQTRIGTSKGITKYCFEHAHEGCTMISVGRRTKADQSTNSNSKRFQDNKRPSSRLLKKDKQCDKGASPVLEDYISGTKAQNRSPRTVLDSLEGQSNSTEDDTFSTRVSSTTYTPSLDSKIKRRSKIRKSQLSFRFIVSFLASPFRRKNFNMSKNEKPQPLLKCFSYEQISHATNDFHQDNLVGRGGYSEVYRGDLSDGRTIAVKRLAKDNKDPNKEKEFLVELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATALHGKGGDSLDWPIRYKIAIGIAKGLHYLHMCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIAELADPRLEGKYDGEQLYRVILTASYCVRQTATWRPPMSEVLELLTSGQDSENGKSWRIPKFTSDELDDYSMVCGRSEVISIRYEVGSLFL 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17428g00001 631 Gene3D Transferase(Phosphotransferase) domain 1 396 603 - -
Mupr17428g00001 631 SMART serkin_6 318 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mupr17428g00001 631 Pfam Universal stress protein family 8 121 IPR006016 -
Mupr17428g00001 631 MobiDBLite consensus disorder prediction 172 188 - -
Mupr17428g00001 631 Pfam Protein kinase domain 318 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mupr17428g00001 631 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Mupr17428g00001 631 CDD USP_Like 8 121 - -
Mupr17428g00001 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Mupr17428g00001 631 Gene3D Phosphorylase Kinase; domain 1 280 394 - -
Mupr17428g00001 631 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 395 599 - -
Mupr17428g00001 631 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 121 - -
Mupr17428g00001 631 ProSiteProfiles Protein kinase domain profile. 318 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mupr17428g00001 631 SUPERFAMILY Protein kinase-like (PK-like) 291 585 IPR011009 -
Mupr17428g00001 631 Gene3D HUPs 4 126 IPR014729 -
Mupr17428g00001 631 MobiDBLite consensus disorder prediction 189 208 - -
Mupr17428g00001 631 MobiDBLite consensus disorder prediction 216 259 - -
Mupr17428g00001 631 PANTHER OS08G0249100 PROTEIN 60 598 IPR046958 -
Mupr17428g00001 631 MobiDBLite consensus disorder prediction 172 265 - -
Mupr17428g00001 631 FunFam Putative receptor-like serine/threonine-protein kinase 285 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17428g00001 Mupr-Chr17428 6508 9443 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17428g00001 306 590 Trihelix Transcription Factor Family AT1G70460 43.878 2.01e-71 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Mupr17428g00001 PK_Tyr_Ser-Thr 1.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17428g00001 - - gmx:100782832 1071.61