Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17420g00001 ATGAGTGAGGCTGAGAAGCAAAGGGTATCTGGCAAGGTCAAGTGGTTCAATGACCAGAAGGGCTTCGGCTTCATAACCACCGACGACGCCGGTGAGGATCTCTTCGTCCACCAGTCCTCCATCCGATCCGACGGTGGATTCCGCAGCCTCGCTCTCGGCGAGTCCGTCGAGTTCCTTATTGACTCCGATCCCGAGGGTCGCACCAAGGCTGTCGATGTCACTGGCCCCGACGAATCCCCCGTTCAGGGAAGCCGCCGTTCTGCTCCCTCTTTCGGTTCCGGCGGCGGACGCGGAGGATATGGTGGCGGACGCGGCGGAAGAGGTGGCTACGGAGGCGGGGGTGGCGGTTATGGAGGTGGCGGTGGTGGAGGGTTCTATGGAGGAGGAGGAGGCGGCGGCGGTGGAGGGGGTTGTTACAAGTGTGGCGAGACGGGTCACATAGCCAGGGACTGCAGCCAAGGTGGCGGCGGCGGTGGAAGGTATGGCGGTGGGTGCTGCTACAACTGTGGGGAGTCTGGGCATTTCGCCAGAGACTGTCCTTCGGGAGCCAACTTTTACCCAGTTTTTGAGGTCTAG 576 0.6198 MSEAEKQRVSGKVKWFNDQKGFGFITTDDAGEDLFVHQSSIRSDGGFRSLALGESVEFLIDSDPEGRTKAVDVTGPDESPVQGSRRSAPSFGSGGGRGGYGGGRGGRGGYGGGGGGYGGGGGGGFYGGGGGGGGGGGCYKCGETGHIARDCSQGGGGGGRYGGGCCYNCGESGHFARDCPSGANFYPVFEV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17420g00001 191 MobiDBLite consensus disorder prediction 66 100 - -
Mupr17420g00001 191 Gene3D - 159 184 - -
Mupr17420g00001 191 Gene3D - 134 158 - -
Mupr17420g00001 191 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 181 - -
Mupr17420g00001 191 Pfam 'Cold-shock' DNA-binding domain 10 75 IPR002059 GO:0003676
Mupr17420g00001 191 CDD CSP_CDS 9 75 IPR002059 GO:0003676
Mupr17420g00001 191 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Mupr17420g00001 191 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Mupr17420g00001 191 PRINTS Cold shock protein signature 48 66 IPR002059 GO:0003676
Mupr17420g00001 191 SMART csp_8 10 76 IPR011129 GO:0003676
Mupr17420g00001 191 SUPERFAMILY Retrovirus zinc finger-like domains 127 182 IPR036875 GO:0003676|GO:0008270
Mupr17420g00001 191 ProSiteProfiles Cold-shock (CSD) domain profile. 8 75 IPR002059 GO:0003676
Mupr17420g00001 191 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
Mupr17420g00001 191 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Mupr17420g00001 191 ProSiteProfiles Zinc finger CCHC-type profile. 138 153 IPR001878 GO:0003676|GO:0008270
Mupr17420g00001 191 Gene3D - 1 88 IPR012340 -
Mupr17420g00001 191 SUPERFAMILY Nucleic acid-binding proteins 7 80 IPR012340 -
Mupr17420g00001 191 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Mupr17420g00001 191 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Mupr17420g00001 191 Pfam Zinc knuckle 165 181 IPR001878 GO:0003676|GO:0008270
Mupr17420g00001 191 Pfam Zinc knuckle 137 153 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17420g00001 Mupr-Chr17420 1750 3060 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mupr17420g00001 CSD 8.5e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17420g00001 - - gmx:100820359 221.476