LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr17400g00001	ATGGCATATTCTTCATTCGGAGTTTCTCATAAAATCAAGTATGTTGTATTTGTTTGTCTCTTGCTTATTTCAATGGCGGTAAAGGAAACGGTGTACAATGTTTCTGCGCAACCAGTAACATCTTTAACTTGTTCCGGTGACACCCCTCAAACAAAGTACGATGTCTTTGTTTCCTTTAGAGGTCCGGACGTTCGGGATGGTTTCCTTAGCCACTTGATTAAGGAATTTTCTCAGAAGCACATTGTTTTCTTTATAGATGATAAGATTCCCAAAGGAGATGAAATAGACGAAGCACTTTTTGGAGCAATTGAAGGATCATCAATTTCCATTATTATATTTTCACAACGCTTTGTTTTTTCACCATGGTGTTTGTTAGAACTTGTGAAAATAATTGAGTGTAGGAAAAAGAATGGACAGATTGTACTACCTATTTTCTACCATGTCGATCCTTCAAATGTAAGACATTCAAAGGAGATTTACAGAACAGCCTTTGCAAAACATAGAAAGAGGTATAGTTGGACCACTATTCAAACCTGGATATCTGCTTTGAATGAATCTGCTAATCTAGCAGGATATCATTCATCAAAATTTCGGAATGATTCGGAGCTTGTTGAAGAGATAGTTAAAGATGTGTCGATGAGACTGAATCATGTGCACCAACTTAACTCAAAAGGGCTTGTTGGAATTGATAAACAAATTGCACATGTAGAATCATTGCTACAATTAGAGGCAACTGGTGTTCGTATTATTGGAATATGTGGTATTGGTAAGACAACCATTGCACGAAAAGTACGTGATAAACTGTGTTTTAAATATGAAGGTTGTTTCTTTTGGGCTAACATAAGAGAAGTAAGGGGAAGACATGAAATAATCTCTTTAAAGAAAAAGCTTTTTTCAACGTTTTTAGGAGAAAAATATTTGAAAATTGACAAACCTAATGAGTTTCCTCAATATGTTGAGAAAAAGCTTCGTGGTATGAAGGTTCTTATCATTCTTGATGGTATCAATAATTCCAAGCAACTAGAAGTTTTAGATGGAACACTTGGTTGGCTTGGATCAGGTAGTAGAATCATCATAACAACTAGAGATGAAGATTTGCTTGGTAAAAAGTTTGCTGACATATATATGGTTAAGGCATTAAACTTCAATGAATCTTTACGGCTTTTACATGTGAGCACCTTTAAACAAAGTAATATTCTTAAATTAAAGCGTTATGAGTTGTCCAAGAGAGTGGTCGAATTTGCTGAAGGCAATCCATTAGTTCTTAAAGTTTTGGGTGACTTTCATCGTGGAAACGGTAAAGAAATATGGGAAAGCCAATTAGAAGGACTTGGAAAGGTGCAAAGCAAAAAGGTTCATGATGCTTTTAAATTGAGTTACAATGATCTTGGTCAAGATGAGAAGAAGATATTCATGGATATTGCATGTTTATTCCATGAACAAAATTTGAAAGTAAACTACATCAGTTTTTTATTGAAAGGTCATGATTATTCAGTGAATGCTGAGTTAAAAAGTTTGAAGGACAAAGCTGTTGTAAGCATTTCTCAAGAAAATATTGTATCAATACATGACATGATACAAGAAACAGCTTGGCAGATTTCTCGTCTTGAAGATCCTGGAAGCCAAAGTCGACTATGGGATCCTCAAGACATTTATCAAGTACTAGAATATAACAAGGAAAAACAGCTTATAATGATATTTGAAAATTTTCTACTACTTTGCTTGCAGGGGGACGAGGGTATTAGAAGTATAGTTGTTGACTTGTCGAGAATTAAGCAATTGCATCTAGACCCTCAAGTATTTATGAAGGTGAGCAAACTATGTTTGCTAGACTTTTATCATAGTAAAGGGTCAAACAGTTTCCTCCAGGATCAAGAGGGCTTATATCTCCCTCAAGGTCTTGAATCTTTGCCGAATGATCTAAGATATCTACGTTGGACCCATTACCCTTTGGAATCTTTGCCTTCAAAGTTTTCTGCAGAAAATCTAGTTGAATTGAACTTGCCATATAGCCGAGTGAAAAAACTTTGGCATGAAGCGCCGGATCTTGTGAATTTAAAGGTCCTTATACTCCATTCATCCACACAACTAAAGGAGCTGCAAGACTTTTCAAAGGCCAGAAATCTTACAGAAATAGGTCTCCGATCTTGTGAAGGGCTGGTTAGTGTGCATCAATCCGTTTTCTCTCTCAAAAAGCTTGAGAAATTGGATCTTGGTGGATGCATTTCCCTTACAAGCCTCCGAAGTCAAGTCCATTTGGAGTCCCTTCGTTTTCTCTCCCTTTATGGTTGCAAGGAACTAAAGGATTTTTCAGTGACCTCAAAGAATATGATAAAATTGAATTTAGAACTCACTGGCATCAAACAACTTCCTTCATCTATTGGACTTCAAGGAAAGCTTGAAAAGCTACATCTAGCATACACTTACATTGAGAACTTGCCTGCAAGCATCAAGAATCTTACAAGGCTACGACATCTAAATCTAAGTCACTGCAGGGAGCTTAGGACTCTCCCTGAGCTTCCTCCATCACTTGAAATACTAGATGCTCGTGAATGCATATCACTGGAGACTGTAATGTTTCCTTCTTCTGCTAGTGAACAACTAAAGGAAAATAAGAAAAGGGTTGCCTTCTGGAACTGCTTGAAATTGGATGAACATTCTCTCAAGGCTATTGGGCTGAATGCACAAATTAACATGGTAAAATTTGCACACCAACATTTACCTACACTTGCTGATGCTCAAGGTACTTATGTGTATCCGGGAAGCAACGTTCCAGAATGGTTGGAGTACAAGACAACACATGACCACATAACTATTGATCTTTCTTCTGTTCTTGCTCTACACTCCTCTCACTTGGGATTCATTTTTTGCTTCGTTGTTCCTCCAATCCCACATGGGGATTCGGTTTTGAAATTTAAGATCAGTGCAGGTGAAGGTGAAGGTAACAACATTGATGTGTACTTAAACAGACCACGTCATGGTATTCAATCGGATCATGACCAAGCATGTTCTCGCTACCTAAATAATCATGCCAAACATCAGCCAAGATTGAAGATTAAGGTTACAGTCTCATCACGAACGCCCACATCCTGGAATGTACCAGTGCAGTTAAGAGGGGTTGGGGTCAGTACAATCAACACTACACAAAACCTCATTTTTCTTGAAAAAATTAAATTGGGTGATGGAAATATTTCAAATTTCCCTATTTTGTTTTCTTACTTTTGTACTTTCGTTGTTTCCATTTATTTTGTACTATTTTCACGGGTTTGCCGTCGTCGTTTGATA	3285	0.3714	MAYSSFGVSHKIKYVVFVCLLLISMAVKETVYNVSAQPVTSLTCSGDTPQTKYDVFVSFRGPDVRDGFLSHLIKEFSQKHIVFFIDDKIPKGDEIDEALFGAIEGSSISIIIFSQRFVFSPWCLLELVKIIECRKKNGQIVLPIFYHVDPSNVRHSKEIYRTAFAKHRKRYSWTTIQTWISALNESANLAGYHSSKFRNDSELVEEIVKDVSMRLNHVHQLNSKGLVGIDKQIAHVESLLQLEATGVRIIGICGIGKTTIARKVRDKLCFKYEGCFFWANIREVRGRHEIISLKKKLFSTFLGEKYLKIDKPNEFPQYVEKKLRGMKVLIILDGINNSKQLEVLDGTLGWLGSGSRIIITTRDEDLLGKKFADIYMVKALNFNESLRLLHVSTFKQSNILKLKRYELSKRVVEFAEGNPLVLKVLGDFHRGNGKEIWESQLEGLGKVQSKKVHDAFKLSYNDLGQDEKKIFMDIACLFHEQNLKVNYISFLLKGHDYSVNAELKSLKDKAVVSISQENIVSIHDMIQETAWQISRLEDPGSQSRLWDPQDIYQVLEYNKEKQLIMIFENFLLLCLQGDEGIRSIVVDLSRIKQLHLDPQVFMKVSKLCLLDFYHSKGSNSFLQDQEGLYLPQGLESLPNDLRYLRWTHYPLESLPSKFSAENLVELNLPYSRVKKLWHEAPDLVNLKVLILHSSTQLKELQDFSKARNLTEIGLRSCEGLVSVHQSVFSLKKLEKLDLGGCISLTSLRSQVHLESLRFLSLYGCKELKDFSVTSKNMIKLNLELTGIKQLPSSIGLQGKLEKLHLAYTYIENLPASIKNLTRLRHLNLSHCRELRTLPELPPSLEILDARECISLETVMFPSSASEQLKENKKRVAFWNCLKLDEHSLKAIGLNAQINMVKFAHQHLPTLADAQGTYVYPGSNVPEWLEYKTTHDHITIDLSSVLALHSSHLGFIFCFVVPPIPHGDSVLKFKISAGEGEGNNIDVYLNRPRHGIQSDHDQACSRYLNNHAKHQPRLKIKVTVSSRTPTSWNVPVQLRGVGVSTINTTQNLIFLEKIKLGDGNISNFPILFSYFCTFVVSIYFVLFSRVCRRRLI	1095

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr17400g00001	1095	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	213	474	IPR027417	-
	Mupr17400g00001	1095	Pfam	TIR domain	52	227	IPR000157	GO:0007165
	Mupr17400g00001	1095	SMART	till_3	52	189	IPR000157	GO:0007165
	Mupr17400g00001	1095	FunFam	Disease resistance protein (TIR-NBS-LRR class)	49	217	-	-
	Mupr17400g00001	1095	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	53	854	IPR044974	GO:0006952
	Mupr17400g00001	1095	Pfam	NB-ARC domain	245	455	IPR002182	GO:0043531
	Mupr17400g00001	1095	SUPERFAMILY	"Winged helix" DNA-binding domain	451	556	IPR036390	-
	Mupr17400g00001	1095	ProSiteProfiles	TIR domain profile.	51	215	IPR000157	GO:0007165
	Mupr17400g00001	1095	SUPERFAMILY	Toll/Interleukin receptor TIR domain	47	192	IPR035897	-
	Mupr17400g00001	1095	Gene3D	-	379	464	IPR042197	-
	Mupr17400g00001	1095	Gene3D	-	50	213	IPR035897	-
	Mupr17400g00001	1095	Gene3D	-	214	374	IPR027417	-
	Mupr17400g00001	1095	PRINTS	Disease resistance protein signature	322	336	-	-
	Mupr17400g00001	1095	PRINTS	Disease resistance protein signature	246	261	-	-
	Mupr17400g00001	1095	PRINTS	Disease resistance protein signature	415	429	-	-
	Mupr17400g00001	1095	PRINTS	Disease resistance protein signature	818	834	-	-
	Mupr17400g00001	1095	SUPERFAMILY	L domain-like	585	1073	-	-
	Mupr17400g00001	1095	Gene3D	Ribonuclease Inhibitor	774	922	IPR032675	-
	Mupr17400g00001	1095	Gene3D	Ribonuclease Inhibitor	575	773	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr17400g00001	Mupr-Chr17400	7409	11186	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr17400g00001	34	865	WRKY Transcription Factor Family	AT4G12020	32.670	4.63e-96	335

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr17400g00001	-		-	gmx:100802823	1412.9