Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17399g00001 ATGGCCAGAAAAATTGTGATGTTATTCTCCGAACTTTATTTTGATGTGAAGGCATGGGTTTCAAGACATGGGCTGTGGGATTTGCACTTGGAAATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGATACTTTATTACGTTCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTTAATAGGGATGCAAAGTCGTGTTTGGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGGTCTCTCACCGAAGAAGAGCAGCACCTTGTGATCCGCCTTCAAGCGAAATATGGCAACAAATGGAAGAAAATCGCCTCAGAAGTCCCGGGACGCACTGCTAAGAGGTTAGGCAAGTGGTGGGAGGTCTTCAAAGAGAAGCAGCAGAGAGAGAAGAAGGAGATCAACAGAATGGCCGACCCAATTGACAACAGTAAATACGAGCACATACTTGAGAGTTTTGCAGAAAAACTAGTGAAGGAACGCCCTTCACCATCGTTTGTTATGGCTGCTTCTGAAACACCAGCACCTGCATCAGCCTTGTTTCCTTCTTGGCTTTCCAATTCTAGTAGTGCTGCAGCCGTCGGACCAAGTTCCCTTTCCGTGACGCTAAGTCTTTCTTCCTCAACGGTGGCAGCGCCTCCATTTTCATGGTTGCAACCCGACAGAGGGCAGGACAATGCTCCTTTTGTTTTGGGGAATGTAGCTGCGCTTCACGGAGCTGTTCCTGTTCCTGTTCCGGCTTTAAGTGATAACATGCTTATTTCTCAGATGGTGGAGCACTGTAAAGAGTTGGAAGAGGGCCATCGTGCTTTGGCCATGCACAAGAAGGAGGCGGCATGGAGGTTAAGTCGGGTGGAGTTGCAGTTAGAGTCAGAGAAGGCAAGTCGAAGAAGGGAGAAGATGGAAGAGTTTGAAGCAAAGATCAAAGCTCTTCAGGAAGAGGAGAGAGCTGCTTTGGGTAGAATTGAAGCAGAATGCAGAGAACAGTTAGCTGCATTGAGGAGGGATGCTGAAAACAAGGAGCAAAAGTTGGCAGAACAATGGGCTGCAAAGCATTTGCGGCTTACTAGATTACAAAACAAACTTGAGAAAACCCTCCTTACTAGTACCAGAGGAGGGATTAGGAAATTGAAAATTGAGAATAAGGAGAAAGAATAA 1191 0.4652 MARKIVMLFSELYFDVKAWVSRHGLWDLHLEMKERQRWRAEEDTLLRSYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVIRLQAKYGNKWKKIASEVPGRTAKRLGKWWEVFKEKQQREKKEINRMADPIDNSKYEHILESFAEKLVKERPSPSFVMAASETPAPASALFPSWLSNSSSAAAVGPSSLSVTLSLSSSTVAAPPFSWLQPDRGQDNAPFVLGNVAALHGAVPVPVPALSDNMLISQMVEHCKELEEGHRALAMHKKEAAWRLSRVELQLESEKASRRREKMEEFEAKIKALQEEERAALGRIEAECREQLAALRRDAENKEQKLAEQWAAKHLRLTRLQNKLEKTLLTSTRGGIRKLKIENKEKE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17399g00001 396 Gene3D - 35 89 - -
Mupr17399g00001 396 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 32 374 - -
Mupr17399g00001 396 FunFam MYB-related transcription factor 35 89 - -
Mupr17399g00001 396 Gene3D - 93 155 - -
Mupr17399g00001 396 ProSiteProfiles Myb-like domain profile. 30 84 IPR001005 -
Mupr17399g00001 396 Coils Coil 305 332 - -
Mupr17399g00001 396 Pfam Myb-like DNA-binding domain 38 99 - -
Mupr17399g00001 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Mupr17399g00001 396 Coils Coil 334 358 - -
Mupr17399g00001 396 CDD SANT 37 84 IPR001005 -
Mupr17399g00001 396 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Mupr17399g00001 396 SMART sant 89 137 IPR001005 -
Mupr17399g00001 396 SMART sant 34 86 IPR001005 -
Mupr17399g00001 396 SUPERFAMILY Homeodomain-like 35 129 IPR009057 -
Mupr17399g00001 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 84 IPR017930 -
Mupr17399g00001 396 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17399g00001 Mupr-Chr17399 877 5101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17399g00001 32 369 MYB Transcription Factor Family AT2G37630 60.388 4.44e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mupr17399g00001 Myb_DNA-bind_6 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17399g00001 K09422 - gmx:100101908 593.578