Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17354g00001 ATGGATAGAGGCGGTTCCACAGACGAAACAACCACAACCAGCGACTCTCTTTCTGTTCCGGCGAGGCTATCTCCTCCACCGACGAACACGCTCAGCCGCGTCGGCAGCGGCGCCAGCGCCGTCGTCGACCCCGACGGTTGCGGCGGCTCCGGCGAAGCCGAGTCCCGGAAACTCCCGTCGTCGAAATACAAAGGCGTGGTGCCGCAACCTAACGGCCGTTGGGGCGCACAGATTTACGAGAAGCACCAGCGCGTGTGGCTTGGCACCTTCAACGAGGAAGACGAAGCAGCCAGAGCCTACGACATCGCCGCGCAGAGGTTCCGAGGCCGAGACGCCGTCACCAATTTCAGGCCTCTCACCTGCGCGAGCGACGACGACGCCGAATTCGAGTTCCTCAACTCGCATTCCAAGTTCGAGATCGTCGACATGCTCCGCAAGCACACCTACGACGACGAGCTCCAGCAGAGCAGGCGCGGCACGTGCGACGGAAGGCGCCGCCGCCACGGCGAGACCGCATCGAGCGGCGCGAAGGCGCGTGAGCAGCTGTTCGAGAAGACGGTGACGCCGAGCGACGTCGGGAAGCTGAACCGATTGGTGATTCCGAAGCAGCAAGCGGAGAAGCACTTCCCGTTGGGCGGCGGATCCGGCGACGGAGTGTCGCCGTGCGTGGCGGCGGCGAAGGGAGTACTGCTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTGACGAAAGGATGGAGCCGGTTCGTGAAGGAGAAGAATCTTCGTGCCGGTGATGCGGTTCGGTTCTTCAAGTCGACCGGACCGGACCGGCAGTTATTTATAGACTGCAAGGCTAGGAATAGTGGCGAGGTTGATACTAACGGTGGCTTGTTTATTCCGGTTGTTGAACCGGTTCAGATAGTTCGGCTTTTCGGGGTCAACCTTTTGAAACTACCCGGTTCGGACGGTGTCGGGGTTGGCTGCGATGGGAAGAGGAAAGAGATGGAACTGTTTGCCTTAGAATGTAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1083 0.5928 MDRGGSTDETTTTSDSLSVPARLSPPPTNTLSRVGSGASAVVDPDGCGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFRPLTCASDDDAEFEFLNSHSKFEIVDMLRKHTYDDELQQSRRGTCDGRRRRHGETASSGAKAREQLFEKTVTPSDVGKLNRLVIPKQQAEKHFPLGGGSGDGVSPCVAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFKSTGPDRQLFIDCKARNSGEVDTNGGLFIPVVEPVQIVRLFGVNLLKLPGSDGVGVGCDGKRKEMELFALECSKKLKVIGAL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17354g00001 360 Gene3D AP2/ERF domain 61 118 IPR036955 GO:0003700|GO:0006355
Mupr17354g00001 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 57 336 IPR044800 GO:0003700
Mupr17354g00001 360 MobiDBLite consensus disorder prediction 1 66 - -
Mupr17354g00001 360 Pfam AP2 domain 61 109 IPR001471 GO:0003700|GO:0006355
Mupr17354g00001 360 Pfam B3 DNA binding domain 183 278 IPR003340 GO:0003677
Mupr17354g00001 360 ProSiteProfiles AP2/ERF domain profile. 62 117 IPR001471 GO:0003700|GO:0006355
Mupr17354g00001 360 SMART rav1_2 62 123 IPR001471 GO:0003700|GO:0006355
Mupr17354g00001 360 MobiDBLite consensus disorder prediction 7 36 - -
Mupr17354g00001 360 ProSiteProfiles B3 DNA-binding domain profile. 183 294 IPR003340 GO:0003677
Mupr17354g00001 360 CDD B3_DNA 182 277 IPR003340 GO:0003677
Mupr17354g00001 360 SMART B3_2 183 294 IPR003340 GO:0003677
Mupr17354g00001 360 MobiDBLite consensus disorder prediction 152 178 - -
Mupr17354g00001 360 Gene3D - 171 305 IPR015300 -
Mupr17354g00001 360 SUPERFAMILY DNA-binding domain 61 117 IPR016177 GO:0003677
Mupr17354g00001 360 CDD AP2 61 117 IPR001471 GO:0003700|GO:0006355
Mupr17354g00001 360 MobiDBLite consensus disorder prediction 152 174 - -
Mupr17354g00001 360 FunFam AP2 domain-containing protein RAP2.8 61 118 - -
Mupr17354g00001 360 SUPERFAMILY DNA-binding pseudobarrel domain 181 293 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17354g00001 Mupr-Chr17354 4011 5093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17354g00001 7 360 B3 DNA Binding Superfamily AT1G25560 60.212 5.17e-140 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Mupr17354g00001 B3 7.9e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17354g00001 K09287 - gmx:100789009 562.762