Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17293g00002 ATGACTGTTGTTGTAACAGTGGTGCTACTATTTGTGGCATTTGTGTTCCTGGTCCTACTTCATGTTTGTCTTTATGAGAGACTCTCTGGTAGGAGAGGATCAATAGTTGAGAGGGGTACAAATGGGGGCAAAAGCATGTCCATAAATGACTTGGAGAAGCTTCCTTGTTACGATTATGTTGCCAAAGGCAACACAAGCAGCCTTGTGGATTGTGCAGTTTGCTTGGAGAGTCTCATCACTGGAGATAAGTGCAGATTGTTACCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTTGACACATGGCTTCTAAAGACACCCATATGTCCAATTTGCAGGTGTAATGCTTATTCTCATAGGGGAAACCAAGTTGTGAGTAACAATGATAGCTTCATTGAACCAAGTAGTGGATCTATGGAGAGCCACACTACCACAGGAATTCAGCTACATGACAATCTGCTTTGTGAGAGGTACCTCAAAATCAGTATTGTTGAGATATTTGATGATGAACAATGA 516 0.4186 MTVVVTVVLLFVAFVFLVLLHVCLYERLSGRRGSIVERGTNGGKSMSINDLEKLPCYDYVAKGNTSSLVDCAVCLESLITGDKCRLLPMCKHSFHAQCVDTWLLKTPICPICRCNAYSHRGNQVVSNNDSFIEPSSGSMESHTTTGIQLHDNLLCERYLKISIVEIFDDEQ 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17293g00002 171 SUPERFAMILY RING/U-box 58 123 - -
Mupr17293g00002 171 Pfam Ring finger domain 70 113 IPR001841 -
Mupr17293g00002 171 FunFam RING-H2 finger protein ATL2K 46 119 - -
Mupr17293g00002 171 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Mupr17293g00002 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 122 IPR013083 -
Mupr17293g00002 171 SMART ring_2 71 112 IPR001841 -
Mupr17293g00002 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17293g00002 Mupr-Chr17293 11693 12360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17293g00002 5 131 C3H Transcription Factor Family AT4G28890 29.787 7.27e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17293g00002 - - gmx:102667575 231.876