Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17289g00001 ATGCCAGAAAACAGGCAGGTTTTGAGGAATGCTGATTCTACACCATCTGGTGACAACATTGAAGAAGCGATTCGACGGTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATTTCCAGATCGACCTGGTGAACCTGACTGCTTATATTATTTGAGGACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTATCATCACCCTGTTCATATTCCAATTGGTACTCATTATGGTGAAGAACTCCCCCAGAGGGCCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGAACAACATGTAAATATCACCATCCAAAGGACAGGCGAGGTGCTGCTCCTGTGTCATTTAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCCTTGGAGCCTACCCCCTGGCTGGATCTCCTACCTCGACAATTATTCCTACATCAGGTTTACCATATGCTGGAGGGTATCCTGCGTGGTCAGTGCCGAGAATGTCGTATTTATCTGGACAGGGCCTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCACAAGGCATTATACCTGTGCAGAGCTGGAACAACTACATGGGAAGTGTGAACCCTGCAATGCCGACTGGTTTTCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGTGAGTCACTTTTTGGTGGGCAAGCAATAAATTCATCTCTCCCAAATAGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGACTGCAAGTTCCACCACCCAAAAGAAAGAATAGCTCAATCATCAATAAATCCCCTTGGCCTTCCTGTGAGACCTGGGCAGGCTATATGCTCATATTACAGAATCTATGGAATGTGCAGGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCTGTCCCTCAGAACTATGGCATGACCTCACCTGCTCTATCTGTACTTGAGACTCCTCTCATTAGTAATCCCAGAGGGTTATCAAATGTACAACCACCTGAGACATCCCCATCTAAATTATCAAGTGACAAGCTTCAGCATTCTGATGCAAAAGCTGCTAAAGAAGATTCATCCAAACAAGCTGATACCACATCAAATTCCTTCCCAGCCTCCTCAGAGCCTTTACATGACTAA 1257 0.4415 MPENRQVLRNADSTPSGDNIEEAIRRLKINDNWDRDAAAQSTQFPDRPGEPDCLYYLRTGMCGYGSNCRYHHPVHIPIGTHYGEELPQRAGQPDCEYFLKTGTCKYGTTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTSTIIPTSGLPYAGGYPAWSVPRMSYLSGQGLQSYVPPFLSSSQGIIPVQSWNNYMGSVNPAMPTGFLGSNLVYDFMNLGESLFGGQAINSSLPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERIAQSSINPLGLPVRPGQAICSYYRIYGMCRFGPTCKFDHPVLAVPQNYGMTSPALSVLETPLISNPRGLSNVQPPETSPSKLSSDKLQHSDAKAAKEDSSKQADTTSNSFPASSEPLHD 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17289g00001 418 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Mupr17289g00001 418 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Mupr17289g00001 418 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Mupr17289g00001 418 Gene3D - 46 124 - -
Mupr17289g00001 418 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Mupr17289g00001 418 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Mupr17289g00001 418 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Mupr17289g00001 418 PANTHER PROTEIN PHOSPHATASE RELATED 33 373 - -
Mupr17289g00001 418 Gene3D - 125 168 - -
Mupr17289g00001 418 MobiDBLite consensus disorder prediction 400 418 - -
Mupr17289g00001 418 MobiDBLite consensus disorder prediction 385 399 - -
Mupr17289g00001 418 MobiDBLite consensus disorder prediction 365 384 - -
Mupr17289g00001 418 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Mupr17289g00001 418 SUPERFAMILY CCCH zinc finger 312 339 IPR036855 GO:0046872
Mupr17289g00001 418 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Mupr17289g00001 418 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Mupr17289g00001 418 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Mupr17289g00001 418 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Mupr17289g00001 418 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Mupr17289g00001 418 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Mupr17289g00001 418 MobiDBLite consensus disorder prediction 365 418 - -
Mupr17289g00001 418 Gene3D - 263 341 - -
Mupr17289g00001 418 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Mupr17289g00001 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Mupr17289g00001 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Mupr17289g00001 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Mupr17289g00001 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Mupr17289g00001 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17289g00001 Mupr-Chr17289 10594 14486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17289g00001 1 401 C3H Transcription Factor Family AT1G04990 46.489 2.52e-118 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr17289g00001 zf-CCCH 5.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17289g00001 - - gmx:100812856 796.578