Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17224g00001 ATGTCGCTGAGGCCAAATGCCAGGACCGAGGTCCGCCGCAATCGTTACAAGGTCGCCGTCGACGCTGACGAGGGCCGCCGTAGAAGAGAGGACAATATGGTCGAGATCCGCAAGAGCAAGCGCGAAGAGAGCTTGCAGAAGAAGCGTCGCGACGGCCTCCAATCTCAGTCGCAGTTCCCCGCTCCTCTTCAGACTTCTACCGTCGACAAGAAGTTAGAGAGTCTTCCTTCCATGGTTGCTGGAGTTTGGTCGGAAGATAACAGTTTGCAACTGGAAGCCACTACGCAATTCCGCAAGCTGCTTTCTCTTGAACGGAGCCCTCCGATTGAGGAAGTTATTCAAGCTGGTGTTGTGCCGCGTTTTGTTGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACAAACATTGCATCTGGAACCTCTGAGAACACTAAGGTGGTCATTGATCATGGGGCTGTTCCTATATTTGTCAAGCTTCTTAGTTCACCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTCGAGATCTTGTGCTCAGCCACGGTGCCCTCGTCCCACTATTGGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACATTATCTAACTTTTGTAGGGGTAAGCCACAGCCTCCATTTGAGCAGGTGAGACCAGCACTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACGGATGCTTGCTGGGCACTGTCATATCTCTCTGATGGCACAAATGACAAAATCCAAGCTGTTATTGAGGCAGGTGTATGTGTCCGATTGGTGCAGCTCCTCACGCACCCTTCTCCCTCAGTGCTGATTCCTGCTCTTCGAACAGTGGGAAATATTGTGACTGGAGATGACATGCAGACTCAGGCTGTTATTGAAGCTGGTCTGATTGCCCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCCACATCGGGTGGAACTCATGAGCAGATTAAGTACTTGGTTGGTCAAGGGACCATAAAGCCTCTTTGTGATCTGCTTGTTTGCCCCGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCTTAGAGAATATTCTGAAGGTTGGAGAAGCTGTGAAGAGCCTGGGTAACAGTGGAGATGTGAACTTGTATGCACAGATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAACCTGCAGAGTCATGACAACAACGAAATATATGAAAAGGCTGTTAAAATTCTTGAAACATACTGGTTGGAAGATGAAGATGAGACACTACCTTCGGGAGATGGTGCTCAACCTGGTTTCAATTTTGGAAGCAATGAGCTTCCAGTCCCATCTGAGACTTGTTGGATGAAGTCTGGAGGTTCAGTCATTGCACCTTGTGTCTGCTTACAGTCTGGTCTAGTGTCCTTCGTG 1521 0.4832 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRRDGLQSQSQFPAPLQTSTVDKKLESLPSMVAGVWSEDNSLQLEATTQFRKLLSLERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCVRLVQLLTHPSPSVLIPALRTVGNIVTGDDMQTQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVGQGTIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAVKSLGNSGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGDGAQPGFNFGSNELPVPSETCWMKSGGSVIAPCVCLQSGLVSFV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17224g00001 507 Pfam Atypical Arm repeat 414 458 IPR032413 -
Mupr17224g00001 507 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Mupr17224g00001 507 Gene3D - 73 453 IPR011989 -
Mupr17224g00001 507 MobiDBLite consensus disorder prediction 23 50 - -
Mupr17224g00001 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 355 IPR000225 GO:0005515
Mupr17224g00001 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Mupr17224g00001 507 MobiDBLite consensus disorder prediction 23 67 - -
Mupr17224g00001 507 FunFam Importin subunit alpha 70 337 - -
Mupr17224g00001 507 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Mupr17224g00001 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Mupr17224g00001 507 PANTHER IMPORTIN ALPHA 12 325 - -
Mupr17224g00001 507 MobiDBLite consensus disorder prediction 51 67 - -
Mupr17224g00001 507 SUPERFAMILY ARM repeat 6 458 IPR016024 -
Mupr17224g00001 507 Pfam Armadillo/beta-catenin-like repeat 360 397 IPR000225 GO:0005515
Mupr17224g00001 507 Pfam Armadillo/beta-catenin-like repeat 317 355 IPR000225 GO:0005515
Mupr17224g00001 507 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Mupr17224g00001 507 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Mupr17224g00001 507 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Mupr17224g00001 507 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Mupr17224g00001 507 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Mupr17224g00001 507 SMART arm_5 189 231 IPR000225 GO:0005515
Mupr17224g00001 507 SMART arm_5 316 356 IPR000225 GO:0005515
Mupr17224g00001 507 SMART arm_5 359 399 IPR000225 GO:0005515
Mupr17224g00001 507 SMART arm_5 148 188 IPR000225 GO:0005515
Mupr17224g00001 507 SMART arm_5 233 272 IPR000225 GO:0005515
Mupr17224g00001 507 SMART arm_5 274 314 IPR000225 GO:0005515
Mupr17224g00001 507 SMART arm_5 105 146 IPR000225 GO:0005515
Mupr17224g00001 507 FunFam Importin subunit alpha 11 50 - -
Mupr17224g00001 507 PIRSF Importin_alpha 2 330 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mupr17224g00001 507 PIRSF Importin_alpha 321 482 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mupr17224g00001 507 Gene3D - 11 50 IPR036975 GO:0006606
Mupr17224g00001 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17224g00001 Mupr-Chr17224 2101 6342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17224g00001 244 421 U-box Gene Family AT5G67340 28.177 2.11e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17224g00001 K15042 - gmx:100792804 835.484