Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17213g00001 ATGGGAAGCTTGGACCCCACGGCGGAGGAGTTCAGATCCCAAAGCCCTAACCGCGGAGTCCAACTCTACTTCCCTTATGGAGAACTGGAAACGATGACGTTTTTCTGTTACGGCGGCGTCTTTCCTGTTCCGTTTCCACCGACACAGTTTTACGCCCCTCCGCTGTCCACGTCACCAACGCGGTCGCTCCTTCTGAGCTTCGTGCCGTCAGTGACGGCCGTTTGCCAATACACGTTGAAGAGGGAGTTGGAGGCGTTGGGGGATGTGAGAGCGGTTCAGATGGAACAGTTTCGTCACGGAACCGTCACCGTTCACTTCTACGACCTGAGACACGCGGAGACGGCGTTCACGACGATTCGTTGGCACCACGAGTGCTTCCGCAACTACCACTACGCGTGGCAAATGCCGTGGGGGACACTTCCCTCCCCCGCGCGTGGGATACTTCACAGTGGGGTAGTGTGGGCCGAGTACACTCTCCCGGCGCGTGACGCTGTTCCTGAACCGCAGAACCAAGGGACTATCGTGGTTTTCAATTTGGATTCCGAGGTGGATTCTGAGACTCTTCGAGAAACCTTCGACTCTTTCGGTCCCATAAAGGAATTGAGACTTGTCCCATCAAGAAAGGACCAAAGATTGGTGGATTATTTTGACACCAGAGACGCTGCTAAGGCTTTGAGGGAAATGAACGGCAAGGAAATTAATGGGAAACAAGTGTCTATTGAATTTAGTGAGGAAAGGAGGTCCTTCCAAGCACTTACGCCTACCATACCCATGACCACATTCTGGCCTCAACTTGCTCCTCACAATGTTGAAGTAGCGATGGCTTCTTTGAATTTGGATGAGCAAGTTCAGGAAGGGGTTGAAGAGGGGCATTCTCGTAAAAGAAAATTCTTTAAAAAACAAAGCAGTTGTTATTATTGGAGGGGAAGACAAGCTGTGAAGCATGAGCCTCGGTTTCTAATTAAGGAAGATGGTATGGTGGAGTCTGGTTGCGTAGATTCTAGAACTACTCTGATGATCAAGAACATACCCAACAAGTACAGCCAGAAGCTATTAATGGACAAGTTGGACAGCCACTGCCGTGAGTGCAACGAGAAGATTGACGATGGCAATGACCAGCTTTTATCGTCCTATGATTTTGTGTACCTTCCCATTGATTTCAACAACAAGTGTAATATGGGATATGGGTTCGTGAACATGACGTCTCCGGAGGCAGCCCTGAGGCTGTATAAGGCTTTCCATCTTCAACCCTGGGAGGTGTTCAATTCAAGAAAAATATGCGAGGTCACCTATGCCAGAATCCAGGGATTGGAAAGTTTGAAGGAGCACTTCAAGAAGTCGAAGTTCCCAAGCGAGATGGAGCAGAACCTGCCAGTGATGTTTTCACCGGCGCGAGATGGGAGGCAACTAACAGAGGCATTAGAATTAGTTGGTCAAAAATACGAAACGATGATCCTTCCCATTCGTCCATATAGGGATGACATGCATGCTCTTTCTGACGATCCAATAGCACAACCCACGTTCAAGGATCACGCTTCAACTAGCGGATCGTGCCAGTAG 1560 0.4949 MGSLDPTAEEFRSQSPNRGVQLYFPYGELETMTFFCYGGVFPVPFPPTQFYAPPLSTSPTRSLLLSFVPSVTAVCQYTLKRELEALGDVRAVQMEQFRHGTVTVHFYDLRHAETAFTTIRWHHECFRNYHYAWQMPWGTLPSPARGILHSGVVWAEYTLPARDAVPEPQNQGTIVVFNLDSEVDSETLRETFDSFGPIKELRLVPSRKDQRLVDYFDTRDAAKALREMNGKEINGKQVSIEFSEERRSFQALTPTIPMTTFWPQLAPHNVEVAMASLNLDEQVQEGVEEGHSRKRKFFKKQSSCYYWRGRQAVKHEPRFLIKEDGMVESGCVDSRTTLMIKNIPNKYSQKLLMDKLDSHCRECNEKIDDGNDQLLSSYDFVYLPIDFNNKCNMGYGFVNMTSPEAALRLYKAFHLQPWEVFNSRKICEVTYARIQGLESLKEHFKKSKFPSEMEQNLPVMFSPARDGRQLTEALELVGQKYETMILPIRPYRDDMHALSDDPIAQPTFKDHASTSGSCQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17213g00001 519 CDD RRM3_EAR1_like 335 436 IPR034458 -
Mupr17213g00001 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 245 IPR000504 GO:0003723
Mupr17213g00001 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 238 IPR000504 GO:0003723
Mupr17213g00001 519 SUPERFAMILY RNA-binding domain, RBD 170 413 IPR035979 GO:0003676
Mupr17213g00001 519 Pfam RNA recognition motif 2 335 445 IPR007201 -
Mupr17213g00001 519 Gene3D - 330 438 IPR012677 -
Mupr17213g00001 519 SMART rrm1_1 173 241 IPR000504 GO:0003723
Mupr17213g00001 519 Gene3D - 156 250 IPR012677 -
Mupr17213g00001 519 PANTHER RNA RECOGNITION MOTIF-CONTAINING 78 247 - -
Mupr17213g00001 519 FunFam Terminal EAR1-like 1 280 441 - -
Mupr17213g00001 519 MobiDBLite consensus disorder prediction 499 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17213g00001 Mupr-Chr17213 851 3867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17213g00001 173 283 Eukaryotic Initiation Factors Gene Family AT2G23350 30.081 4.82e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17213g00001 - - lja:Lj4g3v2717080.1 487.648