Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17197g00001 ATGGATGAGGGAAAGCATAAATCAAGGAAAGAAAGTTTTGAGGTGAAAGATGGGGACTCTAAGAGGAGTCACCGTGATCGTGATCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGATGGGAGGCACAGGGATAGGGAGAAGAGGGATCGTGAGTCCCGAAGGCATGAGAGAGAGAGGAGTTCCGATTCTGATGATAGGTATGATAGAGACAGGGAGAAGCGCAAAGATAAAGATAAGGATAGGACACAAGTTCAGGATGTGGACAGAGAAAGAGCTCGAGACAAGAAAAGGGAAAGGGATAGGGAAGATAGGGAAAGGGAGAGGACAGATAGAGTAAAGGAGAAAGAAAGAGAGAGGGAAAGAAAAGAGGATAAGGAGAGGATCAGAGAAAGGGAAAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAGAGAGAAAGGGGGAGGAGAGCACGAGAGAGGGAGAAGCGTAGGGAAGTTGATAGTGATTACAGTGATGGTGAATCCAGGGAGAGAGATAGAAAGCGGCATAGGAAAGCAGATGGTGATTACAAGAAGAGAGAGAGGGAAAGGAGTGTCAGCAAGCCAAACAGGCAATCTGATGAACATGAAGGAAGCCCAAGAAAAAAGAGTGGCGGAAATGATTCAGATACCAAAGACGAAGAGAGAAAACCTACCCGTGAAGAGGAGATGGAAGATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAATGGCAAGAGCTAAGGAGGAAGAAGGAAGAAGCAGAAAGAGAAAAACATGGTGAAGCAAGTGCTAATGAACCCGAGTCTGGAAAGGCCTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGGACCAGGTACTGGGAAGCAGGATACAGGTATGGATGTAGATGAAGATGACAAACCTGCTGATAAGGAACCTAAGGATGCAATGGTGGTAGATGTTGATAATGGGACAGTTGCATCTGATTTACAGGATGGAACTGCTGGTGCTCCTGCAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTGACATCGTCACTTTCTGATAAAGCTGTTGACTTAAAACCTAAAGATAAAGGGAATGAGCAAAGTCGTGGTGCACAGTCAAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCAGATGATGAAATTGAGAGGGATCCATTGGAAGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTTTCTTTAGTTGACCACTCAAAGATCGACTATGAACCATTTAAGAAAAATTTTTATATCGAAGTGAAGGAGATGTCGAAGATGTCTCCTGAAGAAGCTGCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTATAAAATCATGGCACCAGACTGGACTTGGTAGCAAAATTTTGGAGATAATAAAGAAGTTGAACTTTGAAAAGCCGATGCCTATTCAAGCTCAGGCGCTCCCTGTAATCATGAGTGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTTATTATGGCCCCTACCAGGGAACTTGTTCAACAGATTCACAGTGATATAAGAAAATTTGCTAAGGTAATGGGTCTCAGGTGTGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGCGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGAAAAATAACTAACTTGCGGAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTACTGTTCTCAGCTACTTTTCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATTCAAGTTGGCGGGAGGAGTGTTGTGAACAAAGACATAACACAGCTAGTTGAGGTGAGGCCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTCCACTCACAGGAGAAATGTGATAGTTTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTGTTGCTGCCAGGGGATTAGATGTTAAGGAACTTGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGACGAGCTGGCCGAAAGGGTTGTGCCATTACGTTTATTTCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCTTTGGAACTATCTGAGCAGATTGTTCCCAATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTCGAGCAAGCCCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCGCAAGCTAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCTCAGTTTCTTGCTGCCACTAAAGTTAATTCTCCTGCATTGCCTACTCCCATCTCTGCTGCTCAGCTGATTTCGAATGGTGGACTACCTGTTTCTTTGCCATCTGTTCTTGGTCTCCAGACTGCAACTGTCTTGCCTGGGACAGGGCTTCCCCTTGCTGCAAATGATGGGGCAGCTCGAGCTGCATTAGCTGCTATAAACTTGCAGCACAACTTAGCAAAAATACAATCAGAAGCATTACCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTTCCCCAGAATGCTCGCTGGAAAGTTACACACAAGGAAACGTTAGGCCCTATTTCTGAATGGACTGGAGCTGCCATTACCACCAGGGGGCAGTTTTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTCTACTTGTTCATCGAAGGTCCTACTGAGCAGTCTGTTAAGAGAGCTAAAGCAGAATTGAAACGTGTTCTGGAAGACATTACAAATCAGGCTTTGCAACTTCCTGGTGGAACTCAACCGGGCAAATACTCTGTTGTGCGTAATGGGACTCTGTTAAACACTCTTGTCTCGCGCCCCAATCTGGGACAAGTTGTCTGCCTTTCTTATCCATTCGTTGTCATACAGGTTTTGATTCGGTGTCCTTTTGTAAGGGAAACAAGATTTGATGGAGAGTTTGTTATTAATGCATTTGCCTTGCCACCACTATTTTACTGTGAGATTAATGTGAAATTACTATAA 3624 0.4387 MDEGKHKSRKESFEVKDGDSKRSHRDRDRDRTGERGKDKNDGRHRDREKRDRESRRHERERSSDSDDRYDRDREKRKDKDKDRTQVQDVDRERARDKKRERDREDRERERTDRVKEKERERERKEDKERIRERERERERRDHEREKEKERERERGRRAREREKRREVDSDYSDGESRERDRKRHRKADGDYKKRERERSVSKPNRQSDEHEGSPRKKSGGNDSDTKDEERKPTREEEMEDEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKAWTLEGESDDEEGPGTGKQDTGMDVDEDDKPADKEPKDAMVVDVDNGTVASDLQDGTAGAPADEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAVDLKPKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEIERDPLEEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKNFYIEVKEMSKMSPEEAAVYRKQLELKIHGKDVPKPIKSWHQTGLGSKILEIIKKLNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIRKFAKVMGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQIVPNDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQFLAATKVNSPALPTPISAAQLISNGGLPVSLPSVLGLQTATVLPGTGLPLAANDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALQLPGGTQPGKYSVVRNGTLLNTLVSRPNLGQVVCLSYPFVVIQVLIRCPFVRETRFDGEFVINAFALPPLFYCEINVKLL 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17197g00001 1207 Coils Coil 107 165 - -
Mupr17197g00001 1207 MobiDBLite consensus disorder prediction 418 433 - -
Mupr17197g00001 1207 Coils Coil 235 272 - -
Mupr17197g00001 1207 CDD SF2_C_DEAD 724 854 - -
Mupr17197g00001 1207 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 503 531 IPR014014 GO:0003724
Mupr17197g00001 1207 MobiDBLite consensus disorder prediction 1 280 - -
Mupr17197g00001 1207 SMART helicmild6 764 845 IPR001650 -
Mupr17197g00001 1207 MobiDBLite consensus disorder prediction 375 437 - -
Mupr17197g00001 1207 Gene3D - 713 887 IPR027417 -
Mupr17197g00001 1207 MobiDBLite consensus disorder prediction 919 933 - -
Mupr17197g00001 1207 MobiDBLite consensus disorder prediction 382 396 - -
Mupr17197g00001 1207 MobiDBLite consensus disorder prediction 288 327 - -
Mupr17197g00001 1207 CDD DEADc_DDX46 492 713 - -
Mupr17197g00001 1207 Pfam Helicase conserved C-terminal domain 737 845 IPR001650 -
Mupr17197g00001 1207 PANTHER RNA HELICASE 447 923 - -
Mupr17197g00001 1207 CDD KH-I_AtRH42_like 1039 1140 - -
Mupr17197g00001 1207 Gene3D - 455 712 IPR027417 -
Mupr17197g00001 1207 FunFam probable ATP-dependent RNA helicase DDX17 465 715 - -
Mupr17197g00001 1207 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 712 IPR014001 -
Mupr17197g00001 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 714 IPR027417 -
Mupr17197g00001 1207 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 884 IPR001650 -
Mupr17197g00001 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 885 IPR027417 -
Mupr17197g00001 1207 Pfam DEAD/DEAH box helicase 528 699 IPR011545 GO:0003676|GO:0005524
Mupr17197g00001 1207 MobiDBLite consensus disorder prediction 1 351 - -
Mupr17197g00001 1207 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 658 666 IPR000629 -
Mupr17197g00001 1207 SMART ultradead3 522 727 IPR014001 -
Mupr17197g00001 1207 Coils Coil 1105 1128 - -
Mupr17197g00001 1207 MobiDBLite consensus disorder prediction 919 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17197g00001 Mupr-Chr17197 493 5380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17197g00001 490 865 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 7.47e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17197g00001 K12811 - gmx:100784306 1737.24