Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17184g00001 ATGGCTCTCGAAGCTCTCAACTCACCTACAACAACCGCCCCATCTTTTTCCTTCGACGACCCAACCGTCCCATGGGCTAAACGCAAGCGTTCCAAGCGTTCACGCGACCACCCTTCGGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGTGGCGCCGCCGCCACTAACAACAGCCACGGAACCGCTTCTCAGCCGCACCCCACCCCATATCCTTCCACCAAGCTCAGTTACAAATGTTCCGTTTGCGACAAGGCCTTCCCCTCTTACCAGGCGCTCGGGGGACACAAGGCCAGCCACCGAAAACTCGCCGGCGGCGGGGAAGATCAACCCACCTCCACCTCCTCTGCCGCCACCGCCACCAGCTCCGCCAACACCGGAGGAGGTAGGGCCCACGAGTGCTCCATCTGCCACAAATCTTTCCCCACCGGACAGGCCTTGGGCGGACACAAACGTTGTCACTACGAAGGTAACGGTAACGGTAACGGAAATAGTAACAGCGTTGTCACCGCCTCGGAAGGTATGGGGTCCACCCACACCGTGAGTCACGGCCACCGTGACTTCGATCTCAATATCCCGGCTTTTCCGGAGTTTTCGACCAAGGTCGGAGAAGACGAGGTTGAAAGCCCTCACCCGGTGATGAACAAGAAACCACGCCTCTTCGTGATTCCCAAGATCGAAATCCCCCAATTCCAATGA 708 0.5833 MALEALNSPTTTAPSFSFDDPTVPWAKRKRSKRSRDHPSEEEYLALCLIMLARGGAAATNNSHGTASQPHPTPYPSTKLSYKCSVCDKAFPSYQALGGHKASHRKLAGGGEDQPTSTSSAATATSSANTGGGRAHECSICHKSFPTGQALGGHKRCHYEGNGNGNGNSNSVVTASEGMGSTHTVSHGHRDFDLNIPAFPEFSTKVGEDEVESPHPVMNKKPRLFVIPKIEIPQFQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17184g00001 235 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Mupr17184g00001 235 MobiDBLite consensus disorder prediction 101 132 - -
Mupr17184g00001 235 Gene3D Classic Zinc Finger 79 157 - -
Mupr17184g00001 235 MobiDBLite consensus disorder prediction 111 132 - -
Mupr17184g00001 235 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 199 IPR044653 GO:0003700
Mupr17184g00001 235 Pfam C2H2-type zinc finger 81 105 - -
Mupr17184g00001 235 Pfam C2H2-type zinc finger 134 158 - -
Mupr17184g00001 235 MobiDBLite consensus disorder prediction 1 38 - -
Mupr17184g00001 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 157 IPR013087 -
Mupr17184g00001 235 SUPERFAMILY beta-beta-alpha zinc fingers 81 157 IPR036236 -
Mupr17184g00001 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Mupr17184g00001 235 MobiDBLite consensus disorder prediction 1 18 - -
Mupr17184g00001 235 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Mupr17184g00001 235 SMART c2h2final6 135 157 IPR013087 -
Mupr17184g00001 235 SMART c2h2final6 81 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17184g00001 Mupr-Chr17184 7724 8431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17184g00001 1 231 C2H2 Transcription Factor Family AT1G27730 52.632 1.65e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr17184g00001 zf-C2H2_6 9.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17184g00001 - - gmx:547886 382.874