Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17180g00001 ATGGAGTCTGAAAACTTCCATTGCAAGAATCAAATGATCCTTCAAATCTCCTTCCATTACAAGAAACCTCAACTATGCATTATTACCGCTATCTTCTTCTTGGCTACCACTGTTCTATCTTCAAATCCAAAATTTGAGGCATGCACACCCAAAAGCTGTGGAACTGGCCCCCTCATTAAGTATCCTTTCTGGATTCCTTATGAACAGGAATCATTTTGTGGCTACCCCCACTTTGAGATCACCTGCATGGACAAAAATCCAATTCTCAGAACTTCTAATTATGATTTTTTAGTGAAAGATATTTCTTACTCCAACTCCTCGTTTACTGTGGTCGACATAGCTGTCTATGATGATAAGTGTCCTATTCCCTTATATAATTACAGCTTTGATCAAACTCCATTTACCTACAGTTCAGAAAATTGGAATCTTTCATTCTTCTACAACTGTACCACGGAACCTATAGATTACCCCACTTACGAAGTAGATTGCGCTAAAAATGCTACACATAATTCTTTTGCGGTTTTTCATAAGGAGGCACTGGAGCACAAAAACTATTCGTTGAATGAGTGCCAGTTTATGGTTAATGCTCCTTTGAACAAGAATGCTGCTGTTAATTTCACTAGCTTATTGCGAATGAATTACACTGAGATTTTGAAGATGGGGTTTCTTTTGAATTGGACTGAACCTGATTGCCAGTACTGTGAGAAAAGTGGTGGACGTTGTGGATTTGATGGCAATCAGTTCCTCTGCTTCTGCAAGGACAAGTCCTACTTAAAAAGTTGTGATGATGGTAATGATGCGTTTGGAAATATTGTGATCGTACTTCTGTTGTTTCTTCATCAAGCATTCTTCTCTCTTACAATATCCTTGAATTGGCACAATGCTAACCCTTCTCTGCTTTCCCTGCTAACTGTTGCAGACTCACTCAATTGGCGTAGGAAAATCGCTATAGGTGTTGTTTCTGGTGTGGTAGGAGCACTTCTTGTAGTGATCATTGGCGTCTATTTCATTCGGCGCCGAAGGAAGAATAGTCATGCAATGGCATATATACAATCTAGGAGCCTCTCTACTGATCCATCTTCAAAAGACACTGAGAGGGGAATTCAAAGCTTTACTCAAAGCTTTGTACCTGGAGTGCACCTCTTCTCCTATGAAGAACTTGAAGAGGCCACAAATTACTTTGACTCATCTAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTATTATGGAAAACTGCGGGATAAGCGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAGGAGAGTTAAGCAGTTCATTAATGAAATTAAAATTCTAGCTCAGTTAGTTCATCCAAATCTTGTAACATTATATGGATGCACCTCTCGCCACAGCCGTGAACTTCTGCTTGTGTATGAATACATTCCTAATGGAACTGTTGCTGATCATCTTCATGGTCAAGGATCAAAACCTGGAAAACTCACTTGGGATATTAGAATGAATATTGCTGTGGAGACTGCAAGTGCACTGAAATTTCTTCATGGTAAAGACATCATCCATAGAGATGTGAAAACCAACAATATTCTTCTTGACAATAACTTTCGTGTCAAAGTAGCAGATTTTGGACTCTCGCGTCTTTTTCCAGAAGATGTCACCCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGCTACCAGCTTACTAACAAAAGCGATGTCTATAGCTTTGGAGTGGTGCTGATTGAGCTGATATCGTCCTTGCCTGCTGTTGATATCACAAGGCATAGACATGAAATCAATTTGGCCAACATGGCCATTAACAAGATTCACAATCAGGCACTGCATGAGCTTGTGGACCGCACCCTCGGGTTTGAATCAGATTTCAAGGTAAGGAAAATGATAAATGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGATATGAGACCTTCTATGGAAGAAGTGGTGGACACTCTCAAGGATATACAGAGTGATGGTGGCAAACGTAAAAGCCAGCCTGAGGTAATGGATATCTCGAGCACAGCTGATGATGTTGTGTTGCTGAAGGATGACCCTCCTCCACCATCACCTGATTCTAATGCTGTGAGCAAGTCAACAACACCAAATGCTAGCGGATAA 2160 0.4106 MESENFHCKNQMILQISFHYKKPQLCIITAIFFLATTVLSSNPKFEACTPKSCGTGPLIKYPFWIPYEQESFCGYPHFEITCMDKNPILRTSNYDFLVKDISYSNSSFTVVDIAVYDDKCPIPLYNYSFDQTPFTYSSENWNLSFFYNCTTEPIDYPTYEVDCAKNATHNSFAVFHKEALEHKNYSLNECQFMVNAPLNKNAAVNFTSLLRMNYTEILKMGFLLNWTEPDCQYCEKSGGRCGFDGNQFLCFCKDKSYLKSCDDGNDAFGNIVIVLLLFLHQAFFSLTISLNWHNANPSLLSLLTVADSLNWRRKIAIGVVSGVVGALLVVIIGVYFIRRRRKNSHAMAYIQSRSLSTDPSSKDTERGIQSFTQSFVPGVHLFSYEELEEATNYFDSSKELGEGGFGTVYYGKLRDKRSVAVKRLYENNYRRVKQFINEIKILAQLVHPNLVTLYGCTSRHSRELLLVYEYIPNGTVADHLHGQGSKPGKLTWDIRMNIAVETASALKFLHGKDIIHRDVKTNNILLDNNFRVKVADFGLSRLFPEDVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLIELISSLPAVDITRHRHEINLANMAINKIHNQALHELVDRTLGFESDFKVRKMINAVAELAFQCLQSSKDMRPSMEEVVDTLKDIQSDGGKRKSQPEVMDISSTADDVVLLKDDPPPPSPDSNAVSKSTTPNASG 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17180g00001 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Mupr17180g00001 719 SMART serkin_6 394 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mupr17180g00001 719 CDD TM_EGFR-like 315 345 - -
Mupr17180g00001 719 ProSiteProfiles Protein kinase domain profile. 394 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mupr17180g00001 719 Pfam Wall-associated receptor kinase galacturonan-binding 48 112 IPR025287 GO:0030247
Mupr17180g00001 719 Pfam Protein tyrosine and serine/threonine kinase 397 666 IPR001245 GO:0004672|GO:0006468
Mupr17180g00001 719 Gene3D Transferase(Phosphotransferase) domain 1 471 681 - -
Mupr17180g00001 719 MobiDBLite consensus disorder prediction 669 719 - -
Mupr17180g00001 719 SUPERFAMILY Protein kinase-like (PK-like) 373 668 IPR011009 -
Mupr17180g00001 719 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 28 716 IPR044652 GO:0004672
Mupr17180g00001 719 Gene3D Phosphorylase Kinase; domain 1 367 470 - -
Mupr17180g00001 719 ProSitePatterns Protein kinases ATP-binding region signature. 400 422 IPR017441 GO:0005524
Mupr17180g00001 719 Pfam Wall-associated receptor kinase C-terminal 163 255 IPR032872 -
Mupr17180g00001 719 FunFam Wall-associated receptor kinase-like 20 471 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17180g00001 Mupr-Chr17180 1253 4690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17180g00001 310 719 Receptor kinase-like Gene Family AT1G25390 57.647 1.06e-149 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Mupr17180g00001 PK_Tyr_Ser-Thr 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17180g00001 - - qsu:112024175 780.4