Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17172g00001 ATGGCACCTAAGAATGATGAAACTGCTAAGAAAACAAACAACAGAGGAGCATGGACCGCAGAGGAAGATCAGAAGCTAGCCCAATGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTGTTGCAATTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGCAACATATCAGTTGAAGAAGAAGATTTGATTATTAGGCTTCACAGACTGCTGGGAAACAGGTGGTCTTTGATAGCAAAGAGGCTCCCAGGACGAACAGACAATGAAATTAAGAATTATTGGAATACTTGTTTGTGCAAAAAAGTTAATCACACAAAGGTGAAAGCAGAAACTTCAACGGCACAAGCAACACATGCGACTCAGAATACTGAGGAAAGAGCAGTGGTAGAGAATAAAGAGTCCATTGATGATGGGAGTATTGGGCACTTAGAATTTAACTTTGATGTGAACGAATTCTTCAATTTCTCCTTTGAAGGACCCTATGCGTTGGATTGGATGATCTAG 549 0.4062 MAPKNDETAKKTNNRGAWTAEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHTKVKAETSTAQATHATQNTEERAVVENKESIDDGSIGHLEFNFDVNEFFNFSFEGPYALDWMI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17172g00001 182 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Mupr17172g00001 182 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mupr17172g00001 182 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 7 141 - -
Mupr17172g00001 182 FunFam Transcription factor TT2 71 141 - -
Mupr17172g00001 182 FunFam MYB-related transcription factor 14 67 - -
Mupr17172g00001 182 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mupr17172g00001 182 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Mupr17172g00001 182 Gene3D - 72 145 - -
Mupr17172g00001 182 CDD SANT 72 111 IPR001005 -
Mupr17172g00001 182 Gene3D - 7 68 - -
Mupr17172g00001 182 SMART sant 14 64 IPR001005 -
Mupr17172g00001 182 SMART sant 67 115 IPR001005 -
Mupr17172g00001 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Mupr17172g00001 182 CDD SANT 17 62 IPR001005 -
Mupr17172g00001 182 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mupr17172g00001 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17172g00001 Mupr-Chr17172 5693 6518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17172g00001 7 173 MYB Transcription Factor Family AT5G52600 50.299 2.22e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mupr17172g00001 Myb_DNA-binding 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17172g00001 K09422 - gmx:100791381 339.347