Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1716g00001 ATGGCAGACCCTTACTCCAATTTCTTCTCACCAGGTTTCTTTCACTACCCTTCTCCAAACCCTTCACCCCACCACCATCCATATGTCCACAACTTCATCAACCAAGCCGCCACCACCAACATCAACCACGACACCTTTTTCCACTTTCACCACCACTTCCAAACCACTATCACTTCTTCCTCACCCCCTTCCCCTCCCTTAAGAGAGGCCCTTCCTCTTCTCAGTCTCAGCCCAACAAAGCAAGAGGAAGAAGAGGAACAAGAAGAGGAGGACCAGGATCAGGATCAGGATCAGTTTTGCACTCATGCCATGGATATGGAAGAGGATAACTGCAACAGAACCCTCCACTTCAAAGAAGAGGAGCAAGAAGAAGATGGTGGTGATGACGGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCTTCTGTGCTCTCTTCAGCTTGTTCCACAGACAAAGAACAACAACAAGGAGGAGGAGATGGCAATAATAATGGGAGTGAGGATTCTTCTTCAGGGTTCTTGTCCAACAGGCTCAACAAGGGACAGTATTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGCACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGATTTCAGAACCCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCCTTTGCTGTGAGGGGGGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGCATCTGTGGCTCTGACTTCAAGCACAAGAGGTCCCTTAAAGATCACATCAAAGCTTTTGGGAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGATAATGAGTCCAACCAGTAA 1101 0.4777 MADPYSNFFSPGFFHYPSPNPSPHHHPYVHNFINQAATTNINHDTFFHFHHHFQTTITSSSPPSPPLREALPLLSLSPTKQEEEEEQEEEDQDQDQDQFCTHAMDMEEDNCNRTLHFKEEEQEEDGGDDGVTVALHIGLPSPSAAEIASVLSSACSTDKEQQQGGGDGNNNGSEDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDNESNQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1716g00001 366 SMART c2h2final6 205 227 IPR013087 -
Mupr1716g00001 366 SMART c2h2final6 289 309 IPR013087 -
Mupr1716g00001 366 MobiDBLite consensus disorder prediction 153 180 - -
Mupr1716g00001 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 309 IPR013087 -
Mupr1716g00001 366 FunFam Zinc finger protein WIP2 258 340 - -
Mupr1716g00001 366 PANTHER ZINC FINGER PROTEIN WIP2 46 363 IPR043584 GO:0003700|GO:0010468
Mupr1716g00001 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
Mupr1716g00001 366 SUPERFAMILY beta-beta-alpha zinc fingers 271 309 IPR036236 -
Mupr1716g00001 366 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Mupr1716g00001 366 Gene3D Classic Zinc Finger 204 227 - -
Mupr1716g00001 366 Gene3D Classic Zinc Finger 267 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1716g00001 Mupr-Chr1716 1368 3671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1716g00001 1 366 C2H2 Transcription Factor Family AT3G57670 60.051 3.21e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr1716g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1716g00001 - - gmx:100783088 567.77