Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1713g00001 ATGATAATAAAACCATTGAAGTCTAAAGCATTGAGGCAGAAGCAAAGAGTGTTGAGAATGGGAAGGCAAGGCGAGTCAGAGAAGAAGACGTTGACGTCAATGTTTGAGAGCATTTTCTCAGACAACAGTAACATAATGCTGGCGGCCATCATTTCCCTTCTGCTGGTCATCCTCTTCGTCCTCCTTCTCCACCTCTATGCCAAGTGGTTCCTGGCCCAGGCCCAAGCCCAGGCCCAGGCCCGCCGTCGCCGCACCAGCGTCACGGTGTCGGACGTCCTGGGCCCAGCGAGATTCCACCACCTGCAGAGCTTCAACATAGAAGAGCATCACAACTCGCCTCTCTCCAGCAAAGGACTGGACGCTTCCACCGTGAGAGGCATTCCACTGTTCGTGTACGAGCATAGTAACAATGTGAAAGAAAAAGAAGAAAAAGAAGAAGAAGAAGAAGAACTTGAATGCGTGATTTGTTTGAGTCCCTTCGAGAACGGAGAAGTGGGAAGGTGTTTGCCAAAATGTGGCCACGCTTTTCACTTAAACTGCATTGACATGTGGCTCACTTCGCATTCCAATTGTCCTATTTGTAGAGCTCCCATTCTTCCCAATGATTCTACCCATCTCGATTTCGTTCAGATTTTCGTCGATTCTGCTTCTCAGATTGGGAATGGACAAACTCTCACAGCAACTTCTTCTTCGTCGTCTTCGTTTTCCCTTGCCTGCTCTTTCCACAGAATGCTTGGGAAGGTTCAGCTTCTCCCATCCAGTTACCTTGAGATCCTTGTGTTATTTGAAAATTTTTAA 798 0.4774 MIIKPLKSKALRQKQRVLRMGRQGESEKKTLTSMFESIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQAQARRRRTSVTVSDVLGPARFHHLQSFNIEEHHNSPLSSKGLDASTVRGIPLFVYEHSNNVKEKEEKEEEEEELECVICLSPFENGEVGRCLPKCGHAFHLNCIDMWLTSHSNCPICRAPILPNDSTHLDFVQIFVDSASQIGNGQTLTATSSSSSSFSLACSFHRMLGKVQLLPSSYLEILVLFENF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1713g00001 265 CDD RING-H2_EL5-like 153 195 - -
Mupr1713g00001 265 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Mupr1713g00001 265 SUPERFAMILY RING/U-box 138 202 - -
Mupr1713g00001 265 Pfam Ring finger domain 152 195 IPR001841 -
Mupr1713g00001 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 217 - -
Mupr1713g00001 265 FunFam RING-H2 finger protein ATL1 105 200 - -
Mupr1713g00001 265 Coils Coil 132 157 - -
Mupr1713g00001 265 SMART ring_2 153 194 IPR001841 -
Mupr1713g00001 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 200 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1713g00001 Mupr-Chr1713 11778 12764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1713g00001 39 196 Rapid Response to Elicitors AT3G16720 34.177 5.03e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1713g00001 - - pvu:PHAVU_006G070000g 241.506