Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17109g00002 ATGCAATTAGCATCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCACCATCTTCATTCACAACCATCTGGAGAACCCTCCTTTTCCTGTGAAATTATTCCTATTCCTATTCCTGCTTCTCCCAACAATGATGACGATGATTTACAAAACGTTCGGGTTGATGAGACTTCTCATCTCATAAATGCTGATCAGCCACAATGCCGAATATGTCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACACAAAAGTACGTCCACAGATCATGTCTTGATAATTGGAGATCCACCAAGGAGGGCTTCGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGCTATGAAGAACATCCATATGGATTTTATACAATGGCCGTTCTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCAATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCTAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 780 0.4115 MQLASNGDKEECSESEPILNHHLHSQPSGEPSFSCEIIPIPIPASPNNDDDDLQNVRVDETSHLINADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 259
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mupr17109g00002 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 124 IPR013083 -
Mupr17109g00002 259 MobiDBLite consensus disorder prediction 1 31 - -
Mupr17109g00002 259 CDD RING_CH-C4HC3_MARCH 72 120 - -
Mupr17109g00002 259 SUPERFAMILY RING/U-box 67 123 - -
Mupr17109g00002 259 SMART ringv_2 71 120 IPR011016 GO:0008270
Mupr17109g00002 259 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Mupr17109g00002 259 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 192 259 - -
Mupr17109g00002 259 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mupr17109g00002 Mupr-Chr17109 8005 13153 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17109g00002 59 218 C3H Transcription Factor Family AT1G50440 75.000 1.92e-88 260
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17109g00002 - - gmx:100789593 495.738