Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1708g00004 ATGGTATTAATAGGAGAGACTGGTTCTGGGAAGAGTACGCAGTTGGTGCAGTTTCTTGCTGATTCAGGCATTGGTGCTAATGAATCTATTGTGTGCACCCAACCTCGCAAAATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCAGTGGTTGTTATGATGACCATTCAATCAATTGTTGTTCTACATTTTCATCCTCGCATGATTTTGATTCCAGGATAACATTCATGACAGATCACTGTTTATTGCAGCACTACATGAATGATAATAATTTGTCTGGGGTCTCGTGTATCATAATTGATGAGGCTCATGAAAGGAGCTTAAATACTGATCTACTGTTGACTTTGTTGAAGAATTTACTTTGTAGGAGGGTTGAAATGCGGCTCATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGATTACTTTTATGGCTGTGGAATTTTTCGTGTGCTTGGGAGAAACTTTCCGGTGGATATCAAATATGTTCCTCCTGTTTACACTGGACATTCTGGTTCTGCTGTTGTTGCCACTTATGTTTCTGATGTTGTCAAACTGGCAACTGAGGTAAACAAAACAGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCTCAGATAGAAGTAGAATGGGCTTGTGAAAAGTTTCAAGCACCCTCTGCAGTTGCTTTGCCCTTGCATGGAAAACTTTCATCCGAAGAGCAATTTCGTGTTTTTCAGAATTACCCTGGAAGGAGGAAAGTTATATTTTCAACAAATCTTGCGGAGACGTCACTTACAATTCCTGGTGTTAAGTATGTGATAGACTCTGGGTTTGTTAAAGACTGCAGATTTGATCCTGGCAGTGGGATGAATGTACTCAAGGTTTGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTGTGTGCTATAGACTGTACTCAGAAATCGATTATCAGTCTATGGAATTAAATCAAGAGCCTGAGATTCGAAGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTTGCTTTAGGAGTGAAGAGTGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTCCTAGCTCTATTGATATGGCAATCAGGAATCTAATTCAATTAGGAGCCATTGAACTGACCAATAATGTTCATGAATTAACTCCTGAGGGTTGGTGCTTGGTAAAAATGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTTCAAACATGGTTTGGGTAGGGAAGGTATCGTCCTTGCTGCGGTGATGGCTAACGCTAGTAGCATTTTTTGCAGAGTTGGCAATGAATGTGATAAGCAACGATCTGACTGTCTGAAAGTGCAATTTTGCCATCGTGATGGTGACCTCTTTACTCTTCTCTCTGTGTACAAGGACTGGGATGCTTTGCCTCGAGAAAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCTTGAGGAGGTGCCAAGATTCAATTTTGGAGTTAGAAAATTGCCTCGAGCGGGAACATGACCTTGTTACTCCAAGTTACTGGCGTTGGGACCCTTGTATGCCCTCTAGTCACGATAAGAATTTGAAAAGGGTTATACTATCCTCACTGGCTGAGAATATAGCCATGTACTCTGGCTGCAATCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAACTACATCCATCTTGTTCATTGCTTGTGTTTGCTCAGAAACCAAGTTGGGTAGTTTTTGGTGAGCTTCTTTCAGTTTCTAATCAATATTTGGTCTGTGTGAGTGCATTTGACTTTCAATCGATATACAACCTTTACCCTGCTCCCCTGTTTGATGTATCCAAAATGGCAGAGCGGAAGTTGCAAATTAAGACACTGACTGATTTTGGCTGTATTCTTCTCAAGAAATTTTGTGGAAAAGCCAACAGTAATTTGCTTAGTCTTGTTTCACGTATAAGGAAAGCTTGTATGGACGAACGCATCTTCATTGAAGTGAATATTGACCCGAATGAAATCCAGTTATATGCCACTCCAAATGATATGGATACAGCCCTTGGGTTTGTTAATGATGTTCTAGAATATGAGAGAAAATTGTTACGTGCTGAATGTTTGGAGAAGTGTTTGTATCATGGGTCTGGTTTTTCTCCACCTGTAGCTTTGTTGGGGCCTGGTGCTAAGATAAAGCATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGAAGTGTGGCATCCAAACATAAATGCAATTGATGACAAGGAGCTCTTAATGTATTTTGAGAAGAATACCTCCAGTTGCATCTGTGCTGTGCACAAATTTGCAGGCAATATGAAGGATGAAGATGGAGAAAAGTGGGGCAGGATAACATTTCTGTCCCCTGATGCTGCCAGAAGAGCTACTGAGCTAGATGGACAGGAGTTTTGTGGCTCCTCCTTGAAAATTGTTCCTTCACAATTGGGAGGTGATAAAACATTTTCATTCCCTGCTGTTAGAGCAAAAATTTCTTGGCCTCGTAGGCTTAGCAAGGGATTTGCCGTAGTTAAATGTGATGTAAGGGATGTCGATTTTATCATGAATGATTTCTTTGACCTTACAATAGGAGAAAGGCATGTTCGATGTGATATTAGCAATAAGAGTATGGACAGTATTGTCATAAGTGGGATTGACAGAGAGCTCTCGGAAGCTGAAATATTGGATGAACTAAGAACTGCTACAAGTAAAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGAGGCTGTTGTAAATCCACCATGCAGTGCTTGTGAAGAGGCACTCCTAAAAGAAATTTACCCCTTAATGCCCAAAATAAACCCTCATATTAGTTCTTGCCGAGTTCAGGTGTTTGCCCCTGAGCCTAAGGATTCTTTCATGAGAGCTTTAATAAGTTTTGATGGAAGACTACATTTAGAGGCAGCAAAAGCATTGGAGCAAATTGAAGGGAAGGTGTTACCTGGATGTCTTTCATGGCAAAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCTTGATATTTCCTATTCCAGTGTATCGTGTGATTAAGGAGCAACTGGATAAAGTACTTGCAAGCTTCAGCAAAGTTAGAGGTCTTGAATTGAGCATGGACAGGACAGTTAATGGTTCCCACCGAGTGAAGATAACAGCCAATGCCACAAGGACAGTGGCAGAAGTTAGAAGACCTCTGGAAGAACTATTGAGGGGGAAAACCATTGACCATGACAGCCTCACCCCTGCAGTTCTTCAGCTCATGTTGTCCAGAGATGGCTTTAGTCTTAAAAACTCATTGCAGCAAGAGACAGGAACTTATATTATTTTTGACAGGCACAACTTGAATTTACGGGTGTTTGGTTCGCCAAACAAGGTTGCTTTGGCTCAGGAGAAGGTAATTCAATCCCTCCTTTCACTTCATGAAGGAAAGCAGTTAGAAATCCATCTGAGAGGGAGAGATCTACCTCTTGATTTAATGAAGCAAATGATTAAGAATTTCGGGCCAGATCTCCATGGACTGAAAGAGAAGGTACCTGGGGTAGAATTTTCAATCAACGTACGCCGCCAGGTAATCATTCTTCATGGTAATAAGGAGTTGAAACCAAGAGTAGAAGAAATACTTTTTGAGATTTCTCGGTCGAGCCATCATTTGGTTGAGAGAGTTGACACTGGACCTAGTTGTCCAATTTGCTTGTGTGAGGTTGAGGATGGATACCGTCTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAACAATTTGAATCTGCTATTAGAAACCAAGGCACTTTCCCAGTATGTTGTACTCACAGTGACTGTGGAGATCCCATTCTGCTTACAGATTTGAGATCTCTCGTATTGGGTGATAAGCTGGAGGATCTTTTCAGGGCTTCTTTGGGGGCTTTTGTGACAACGAGTGGCGGAACTTACAGGTTTTGCCCTTCTCCAGACTGCCCCTCAATTTACCGGGTTGCAAATTCTGGGACTGCCGGTGTGCCATTTGTTTGTGGGGCCTGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCTTACATTTCATGTGAGAGGTATAAAGAATTCAAGGAAGATCCGGACTCATCTCTGAAAGAGTGGTGCAAAGGGAAGGAACAAGTTAAGAGCTGCTTTTCGTGTGGGTTTGTTATTGAGAAGATAGATGGGTGCAACCACGTCGAGTGCAATTGTGGAAAGCATGTCTGCTGGGTTTGCTTGGAGTTCTTTAGTAGCAGTGATGAATGTTATAACCATTTGAGAACTATACACATGGCTATCGTATAA 4338 0.4216 MVLIGETGSGKSTQLVQFLADSGIGANESIVCTQPRKIAAKSVAQRVQEESSGCYDDHSINCCSTFSSSHDFDSRITFMTDHCLLQHYMNDNNLSGVSCIIIDEAHERSLNTDLLLTLLKNLLCRRVEMRLIIMSATADAKQLSDYFYGCGIFRVLGRNFPVDIKYVPPVYTGHSGSAVVATYVSDVVKLATEVNKTEKEGTILAFLTSQIEVEWACEKFQAPSAVALPLHGKLSSEEQFRVFQNYPGRRKVIFSTNLAETSLTIPGVKYVIDSGFVKDCRFDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSEIDYQSMELNQEPEIRRVHLGVAVLRILALGVKSVQDFDFVDAPSPSSIDMAIRNLIQLGAIELTNNVHELTPEGWCLVKMGIEPRLGKLILGCFKHGLGREGIVLAAVMANASSIFCRVGNECDKQRSDCLKVQFCHRDGDLFTLLSVYKDWDALPRERKNKWCWENSINAKSLRRCQDSILELENCLEREHDLVTPSYWRWDPCMPSSHDKNLKRVILSSLAENIAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSVSNQYLVCVSAFDFQSIYNLYPAPLFDVSKMAERKLQIKTLTDFGCILLKKFCGKANSNLLSLVSRIRKACMDERIFIEVNIDPNEIQLYATPNDMDTALGFVNDVLEYERKLLRAECLEKCLYHGSGFSPPVALLGPGAKIKHLELEKRSLSVEVWHPNINAIDDKELLMYFEKNTSSCICAVHKFAGNMKDEDGEKWGRITFLSPDAARRATELDGQEFCGSSLKIVPSQLGGDKTFSFPAVRAKISWPRRLSKGFAVVKCDVRDVDFIMNDFFDLTIGERHVRCDISNKSMDSIVISGIDRELSEAEILDELRTATSKRILDFFLVRGEAVVNPPCSACEEALLKEIYPLMPKINPHISSCRVQVFAPEPKDSFMRALISFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLIFPIPVYRVIKEQLDKVLASFSKVRGLELSMDRTVNGSHRVKITANATRTVAEVRRPLEELLRGKTIDHDSLTPAVLQLMLSRDGFSLKNSLQQETGTYIIFDRHNLNLRVFGSPNKVALAQEKVIQSLLSLHEGKQLEIHLRGRDLPLDLMKQMIKNFGPDLHGLKEKVPGVEFSINVRRQVIILHGNKELKPRVEEILFEISRSSHHLVERVDTGPSCPICLCEVEDGYRLEGCGHLFCRLCLVEQFESAIRNQGTFPVCCTHSDCGDPILLTDLRSLVLGDKLEDLFRASLGAFVTTSGGTYRFCPSPDCPSIYRVANSGTAGVPFVCGACYSETCTRCHLEYHPYISCERYKEFKEDPDSSLKEWCKGKEQVKSCFSCGFVIEKIDGCNHVECNCGKHVCWVCLEFFSSSDECYNHLRTIHMAIV 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1708g00004 1445 Gene3D - 1 158 IPR027417 -
Mupr1708g00004 1445 SUPERFAMILY RING/U-box 1390 1438 - -
Mupr1708g00004 1445 ProSitePatterns Zinc finger C2H2 type domain signature. 1420 1441 IPR013087 -
Mupr1708g00004 1445 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 156 IPR014001 -
Mupr1708g00004 1445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1233 1311 IPR013083 -
Mupr1708g00004 1445 FunFam RBR-type E3 ubiquitin transferase 355 461 - -
Mupr1708g00004 1445 ProSiteProfiles Zinc finger RING-type profile. 1236 1278 IPR001841 -
Mupr1708g00004 1445 Pfam Helicase associated domain (HA2) 373 467 IPR007502 GO:0004386
Mupr1708g00004 1445 SMART ibrneu5 1300 1368 IPR002867 GO:0008270
Mupr1708g00004 1445 SMART ibrneu5 1369 1433 IPR002867 GO:0008270
Mupr1708g00004 1445 Gene3D - 1346 1443 - -
Mupr1708g00004 1445 SMART ring_2 1236 1278 IPR001841 -
Mupr1708g00004 1445 Gene3D - 159 331 IPR027417 -
Mupr1708g00004 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 490 IPR027417 -
Mupr1708g00004 1445 ProSiteProfiles TRIAD supradomain profile. 1232 1440 IPR044066 -
Mupr1708g00004 1445 Pfam IBR domain, a half RING-finger domain 1313 1368 IPR002867 GO:0008270
Mupr1708g00004 1445 ProSitePatterns Zinc finger RING-type signature. 1252 1261 IPR017907 -
Mupr1708g00004 1445 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 536 612 IPR011709 -
Mupr1708g00004 1445 SUPERFAMILY RING/U-box 1235 1297 - -
Mupr1708g00004 1445 SMART ha2_5 372 468 IPR007502 GO:0004386
Mupr1708g00004 1445 CDD DEXHc_RHA-like 1 155 - -
Mupr1708g00004 1445 SMART ultradead3 1 165 IPR014001 -
Mupr1708g00004 1445 Pfam Helicase conserved C-terminal domain 193 311 IPR001650 -
Mupr1708g00004 1445 Gene3D - 356 459 - -
Mupr1708g00004 1445 PANTHER ATP-DEPENDENT RNA HELICASE 1 607 - -
Mupr1708g00004 1445 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1231 1313 - -
Mupr1708g00004 1445 Pfam DEAD/DEAH box helicase 2 143 IPR011545 GO:0003676|GO:0005524
Mupr1708g00004 1445 CDD SF2_C_RHA 160 320 - -
Mupr1708g00004 1445 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 186 352 IPR001650 -
Mupr1708g00004 1445 CDD Rcat_RBR_DEAH12-like 1391 1441 - -
Mupr1708g00004 1445 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 98 107 IPR002464 -
Mupr1708g00004 1445 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1364 1442 - -
Mupr1708g00004 1445 SMART helicmild6 214 312 IPR001650 -
Mupr1708g00004 1445 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 159 331 - -
Mupr1708g00004 1445 SUPERFAMILY RING/U-box 1319 1374 - -
Mupr1708g00004 1445 CDD BRcat_RBR 1320 1371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1708g00004 Mupr-Chr1708 18528 23883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1708g00004 1248 1423 ARIADNE family AT3G27710 30.168 7.24e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1708g00004 K12818 - gmx:100810008 2608.17