Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr17033g00001 ATGATTGAACTTCCCACTCCCACCCATTTCCCTCCTTTCTATATAATCCCCTCCACACGACTTCTCCACTTCGTAAATCCTAATCCTTCCATACTCACAAAACCTCAACTCTTTTTTCGGTTCACTACAAACACCAAACACACTATTTATCTTCTGTCTCACCTCACAAGGGAGATGGCAGTTGAAAAGGAAGATTTGGGTTTGAGTCTAAGCTTAAGCTTCCCACACAATCCCCCAACTCCTCTTCATCTCAATCTCATATCCTCTTCCACTTATTCCTCTTCTCCTTCTGGACACAATCCTCAAAAACCCTCCTGGAACGAGCCTTTCACTTCTTCAGGTGAAGCTGGATCGTTCCTACGCGGAATCGATGTAAACCGGTTACCCTCTGCGGTTGATTGCGAAGAGGAAGCAGGTGTTTCATCTCCGAACAGCACGGTTTCTAGCGTGAGTGGAAAGCGCAGCGAGAGAGAGATCAATGGGGAAGAACACGACACAGACAGAGCTTGTTACAGAGGCAACAGCGACGAAGAAGACGCTGAAACATCTAGGAAGAAACTTAGGCTCTCCAAAGACCAGTCAATTATTCTGGAAGAGAGCTTCAAAGAACACAACACTCTCAACCCCAAGCAAAAGTTGGCACTGGCGAAACAGCTGGGTCTTCGAGCAAGACAGGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACCAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTTTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGGCGGCTGCAGAAGGAAGTGCAGGAGCTTAGAGCACTCAAACTTTCCCCGCAGTTCTACATGCACATGACCCCACCGACAACGCTCACCATGTGCCCCTCTTGTGAGCGTGTCGCTGTTCCTCCCTCTGCCGTTGATGCCGCCACGCGTCACCATCACGTGCCACCTGCCCACCCTCGCCCCTTCCCCATTGGCCCATGGGCCACCGCTGCCGCTTCTGTTCCACACAGGCCCTTCGATGCCCTCCGTCCCAGATCTTGA 1041 0.5101 MIELPTPTHFPPFYIIPSTRLLHFVNPNPSILTKPQLFFRFTTNTKHTIYLLSHLTREMAVEKEDLGLSLSLSFPHNPPTPLHLNLISSSTYSSSPSGHNPQKPSWNEPFTSSGEAGSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSGKRSEREINGEEHDTDRACYRGNSDEEDAETSRKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAVDAATRHHHVPPAHPRPFPIGPWATAAASVPHRPFDALRPRS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr17033g00001 346 ProSiteProfiles 'Homeobox' domain profile. 180 240 IPR001356 GO:0003677
Mupr17033g00001 346 CDD bZIP 233 272 - -
Mupr17033g00001 346 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 99 309 - -
Mupr17033g00001 346 Pfam Homeodomain 184 238 IPR001356 GO:0003677
Mupr17033g00001 346 MobiDBLite consensus disorder prediction 155 184 - -
Mupr17033g00001 346 MobiDBLite consensus disorder prediction 87 111 - -
Mupr17033g00001 346 ProSitePatterns 'Homeobox' domain signature. 215 238 IPR017970 GO:0000981|GO:0006355
Mupr17033g00001 346 Coils Coil 239 276 - -
Mupr17033g00001 346 MobiDBLite consensus disorder prediction 139 154 - -
Mupr17033g00001 346 Pfam HD-ZIP protein N terminus 61 158 IPR006712 GO:0005634
Mupr17033g00001 346 CDD homeodomain 184 241 IPR001356 GO:0003677
Mupr17033g00001 346 Pfam Homeobox associated leucine zipper 240 274 IPR003106 GO:0006355|GO:0043565
Mupr17033g00001 346 SUPERFAMILY Homeodomain-like 174 241 IPR009057 -
Mupr17033g00001 346 Gene3D - 188 238 - -
Mupr17033g00001 346 SMART halz 240 283 IPR003106 GO:0006355|GO:0043565
Mupr17033g00001 346 SMART HOX_1 182 244 IPR001356 GO:0003677
Mupr17033g00001 346 MobiDBLite consensus disorder prediction 134 184 - -
Mupr17033g00001 346 FunFam Homeobox-leucine zipper protein 18 170 245 - -
Mupr17033g00001 346 PRINTS Lambda-repressor HTH signature 211 220 IPR000047 GO:0003677
Mupr17033g00001 346 PRINTS Lambda-repressor HTH signature 220 236 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr17033g00001 Mupr-Chr17033 16851 18504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr17033g00001 59 346 Homeobox Transcription Factor Family AT5G47370 62.583 1.22e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mupr17033g00001 HD-ZIP_N 4.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr17033g00001 K09338 - gmx:100783851 476.863