LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr16991g00001	ATGCACAAGCAAGAAGCAAGAAGAAACATAAACACATTCGCCAATTCCGTGGAGACCCATATCAGTGATCGAAAAGGTAAGCACAAGCAAGAAGAAATGGAAGAAGAAAATGGCTTCAACTACGCCATGCAGCTGGTGAACTCTAGCGTGCTATGTATGGCCATGCAGTCAGCCATAGAGCTTGGCATTTTTGACATCATAGGCAAAGCAGGTGTGGGTGCCAAACTATCTGCCAAGGACATTGCAGCACAACTTCCATGCAAGAATCCAGAAGCAGCTACAATGCTGGATCGTATTCTAAGGCTCCTTGCAACTCACTCCATCATTGACTGCACAGTGGTTGCTGATCAATGGGGTCCTCCCCCACATTTGCAGCGACTCTATGGCATCAACACTGTGTCCAAATACTTTGCTTGCATTGATGGTTCTGCCTCACTAGGCCCCTTGATGCTGTACCAACTGAAAGATGCAATTCTGGAAGGAGGTATTCCATTCAACAGGGTCCATGGCAAACACGTGTTTGAATATTCCGAAATGAACTCAAGCTTCAATCAGCTTTTCATGGCAGCAATGACGAACCGTGCCACTTTAATTATGAAGAAGATTGTTGAATCCTACAAGGGTTTTGAGCACATCAATAGGCTGGTGGACGTTGGTGGTGGCCTTGGGGTCACTCTCAATATAATCACTTCTAAATACCCTCACATTAAGGGTATCAATTTTGACTTGCCTCATGTCATAGAACACGCCTCTCCCTATCCTGGTGTTGAGCATGTGGGAGGAAATATGTTTGAAAGTGTGCCAGAAGGAGATGCCATTCTGATTAAGTGTGTGCTTCATGATTGGAGTGATGAATGGTGCTTGAAGGTGTTGAAGAAGTGCCATGGCGCAATTCCTAATGATGGGAAGGTGATTGTTGTGGAGGGAGTTCTTCCAATTGAAGGCAAGACAACAGGTGCAGTGAAGAGCCTTTCACAATTTGATGTTCTGATGATGACTACAAACCCAGGAGGGAAGGAACGAAGTGAAGAGGAATTCATGGCATTGGCAAAAGGAGCTGGATTCAGTGGCATTAGATACACATGCTTTGTCTGTGATGTTTGGGTTATGGAATTCTTCAATCTTATCATGGCTCCATCATCATTGGAAAGCACTAACGGTGAAGCGAAGCAGCTTAAACACGTGGAAGAAGATGAAGATGGCATCCTCTTTGCCATGACCATGATGTCTTCTGTGGTGTTTCCACTTGCGGTTAGGACCGCGGTTGAGCTGGGAATCTTTGACATAATAGCCAGAGCGGGTGAAGGTGCGAAGCTCTCAGCAGAGGACATCATAGAGCAAGTTGGCACAAAGAACCCAGAAGCAACCACAATGTTGGACCGGATTCTGAGGTTATTGACTAGTCACTCCATGCTCTCTTGCTCTCTTGCTCAACCTCATCAACAAGGACAAACGTCTCCCAAGAGACTCTACACTCTCACCTATGCGTCTAAGACCGAACTGAAAGGAGCCATCGTGGAAGGGGGTGTACCATTCAACAGGGTTTATGGCATGCACGCATTTGAATATCCAGCCGTGGATCCCAGGTTCAATGATGTTTTCAACAAAGCTATGTTCAACACTACTACAATAGTCATGAATAGGGTTCTTGAGTTGTACGAAGGTTTTAAGAACATTAACAGGCTGGTGGATGTTGGTGGTGGTCTTGGGATCAATCTCAACCTAATCACTTCTAAATATCCTCACGTTCAGGCTATTAATTTTGACTTGCCTCATGTTGTTGAACATGCCCCTAACTTTCCCGGCGTGGAACATGTGGGAGGAGATATGTTTGAGAGTGTTCCCAAAGGAGACGCCATTTTTATGAAGTGGATACTTCACGATTGGAGTGATGAACATTGCTTGAAGTTGTTGAAGAATTGCTATAAAGCTATTCCTAGTGATGGAAAAGTGATTGCTGTGGACTCAGTTCTTCCCGTTTTGGCGGAGAGTTCAATTACTGCCAAGAGTGGTTTCCAAGCTGACGTCTTAATGTTGACTCAAAACCCAGGAGGGAAAGAGCGAACCCGAGATGAACTCATGGAATTGGCATTAGGTTCTGGATTCACTGGCATCAGATTCATATGCTATGTCTCTGGCTTCTGGGTTATGGAGTTTTTCAAGTAG	2166	0.4506	MHKQEARRNINTFANSVETHISDRKGKHKQEEMEEENGFNYAMQLVNSSVLCMAMQSAIELGIFDIIGKAGVGAKLSAKDIAAQLPCKNPEAATMLDRILRLLATHSIIDCTVVADQWGPPPHLQRLYGINTVSKYFACIDGSASLGPLMLYQLKDAILEGGIPFNRVHGKHVFEYSEMNSSFNQLFMAAMTNRATLIMKKIVESYKGFEHINRLVDVGGGLGVTLNIITSKYPHIKGINFDLPHVIEHASPYPGVEHVGGNMFESVPEGDAILIKCVLHDWSDEWCLKVLKKCHGAIPNDGKVIVVEGVLPIEGKTTGAVKSLSQFDVLMMTTNPGGKERSEEEFMALAKGAGFSGIRYTCFVCDVWVMEFFNLIMAPSSLESTNGEAKQLKHVEEDEDGILFAMTMMSSVVFPLAVRTAVELGIFDIIARAGEGAKLSAEDIIEQVGTKNPEATTMLDRILRLLTSHSMLSCSLAQPHQQGQTSPKRLYTLTYASKTELKGAIVEGGVPFNRVYGMHAFEYPAVDPRFNDVFNKAMFNTTTIVMNRVLELYEGFKNINRLVDVGGGLGINLNLITSKYPHVQAINFDLPHVVEHAPNFPGVEHVGGDMFESVPKGDAIFMKWILHDWSDEHCLKLLKNCYKAIPSDGKVIAVDSVLPVLAESSITAKSGFQADVLMLTQNPGGKERTRDELMELALGSGFTGIRFICYVSGFWVMEFFK	721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr16991g00001	721	CDD	AdoMet_MTases	561	654	-	-
	Mupr16991g00001	721	Gene3D	Vaccinia Virus protein VP39	184	363	IPR029063	-
	Mupr16991g00001	721	FunFam	Caffeic acid O-methyltransferase	485	721	-	-
	Mupr16991g00001	721	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	43	374	IPR016461	GO:0008168
	Mupr16991g00001	721	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	406	721	IPR016461	GO:0008168
	Mupr16991g00001	721	FunFam	Caffeic acid 3-O-methyltransferase	384	499	-	-
	Mupr16991g00001	721	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	151	372	IPR029063	-
	Mupr16991g00001	721	Gene3D	Vaccinia Virus protein VP39	531	710	IPR029063	-
	Mupr16991g00001	721	FunFam	Caffeic acid 3-O-methyltransferase	22	137	-	-
	Mupr16991g00001	721	SUPERFAMILY	"Winged helix" DNA-binding domain	396	499	IPR036390	-
	Mupr16991g00001	721	Gene3D	-	413	549	IPR036388	-
	Mupr16991g00001	721	Pfam	O-methyltransferase domain	152	356	IPR001077	GO:0008171
	Mupr16991g00001	721	Pfam	O-methyltransferase domain	500	702	IPR001077	GO:0008171
	Mupr16991g00001	721	Pfam	Dimerisation domain	53	104	IPR012967	GO:0046983
	Mupr16991g00001	721	Pfam	Dimerisation domain	417	467	IPR012967	GO:0046983
	Mupr16991g00001	721	Gene3D	-	50	202	IPR036388	-
	Mupr16991g00001	721	SUPERFAMILY	"Winged helix" DNA-binding domain	34	137	IPR036390	-
	Mupr16991g00001	721	PANTHER	O-METHYLTRANSFERASE	42	359	IPR016461	GO:0008168
	Mupr16991g00001	721	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	488	719	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr16991g00001	Mupr-Chr16991	655	10365	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr16991g00001	391	721	Monolignol Biosynthesis Gene Families	AT5G54160	49.582	6.15e-118	357

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr16991g00001	K13066		-	atri:130806785	628.632