Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16987g00001 ATGGAGTTCTATGAGCAGGATTTCTTGGAAGAACTAATGAGTCTAAGAAGAGAAACATGGGACACCAATCCAAGCACAGAAGAAAACCAGTTGTTCTCTAATGGTTGGAGTTTTGAGTCTCTTGATCAAAACTCTTTACCTTACCTCCCAAACTCTTGTTGTGGTCAAGAAGTTCCTGAAAGCTACAACAAGGACTACCCCTTGAACGAAATCTATGGCTCCTTACTTGATGAATCCTCACCACAGATTATCGATTCATACTATAGCACCCTTGATACTCCATTTCTCGGCCAAGAGGACTATCCATTGTCCATGATGGAAGAAGAGGACCCGGGTTTGCTCGGGGAAGAGCTTCAGAATTTGGAGCTGCAAACCACGTGCAAAGTGGAGCCAACTCAATCCTCTGAAATGCCCGTTTTCAACATGGGGACGGGTCTGGAAAGAAAGACTCGATCAAAGAAGCTTCAGGGCCAACCCTCCAAGAATCTAATGGCCGAGAGGAGAAGAAGAAAGAGGTTAAACGACCGCCTCTCAATGCTCAGAGCAATTGTCCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGAGACACTATTGATTACATGAAGGAACTTCTGGAGAAGATCAACAATCTGCAACAACAAGTAGAAGTAGATTCAAACATTGGAGGCATTTTCAAAGATGTCAAGTCAAATGATATCCTAGTCAGAAATTCACCAAAGTTTGAGGTGGAGAGGAGTGTGGACACCAGGGTGGAAATTTGCTGTGCAGGGAAGCCAGGCTTGTTACTATCTACAGTAAACACACTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTTATTAGCTGCTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTGGAGCGAAGGACAATGCTGAGTTCTGAAGATATAAAGCAAGCATTATTTAGAAGTGCAGGATATGGAGGAAGAGTATGGTGGACTAGTCCGTGTGATTCTCAGGCAAAGTTACCAATCATAAATGTTCATGTGGAT 1032 0.4302 MEFYEQDFLEELMSLRRETWDTNPSTEENQLFSNGWSFESLDQNSLPYLPNSCCGQEVPESYNKDYPLNEIYGSLLDESSPQIIDSYYSTLDTPFLGQEDYPLSMMEEEDPGLLGEELQNLELQTTCKVEPTQSSEMPVFNMGTGLERKTRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQQVEVDSNIGGIFKDVKSNDILVRNSPKFEVERSVDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELERRTMLSSEDIKQALFRSAGYGGRVWWTSPCDSQAKLPIINVHVD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16987g00001 344 Gene3D - 165 238 IPR036638 GO:0046983
Mupr16987g00001 344 Pfam Helix-loop-helix DNA-binding domain 163 206 IPR011598 GO:0046983
Mupr16987g00001 344 Coils Coil 196 223 - -
Mupr16987g00001 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
Mupr16987g00001 344 CDD ACT_UUR-ACR-like 251 292 - -
Mupr16987g00001 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Mupr16987g00001 344 SMART finulus 163 212 IPR011598 GO:0046983
Mupr16987g00001 344 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 67 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16987g00001 Mupr-Chr16987 3061 4636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16987g00001 148 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.854 4.21e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr16987g00001 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16987g00001 - - gmx:100812578 558.525