Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16974g00001 ATGTCGCCGCCGGCAGTGGTAACGGAGGAGGACGGGCTGAGCAAAGCGTCGTCGACCGTAGCGTCTGGTTCTTCGCAATCCTTAGACTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGGAATTATTTAGGGTTGTCTGATTGCTCATCAGTGGATAGTTGTGCTTCTACTGTCCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTAAGGTTGGGTCTTCCCGGATCTCAATCACCTGGAAGGGATCCGGATCTTTTCACTTTAAGCTCAGCAAAGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACTAAAGATGGGATATGCTCGTCGTCGCAGAAAACAGTTGTTTCGGGCAACAAAAGAGGTTTTGCTGATACCATAGATGGGTTTTCTCAGGGGAAGTTTACTGGTAATACAGGGATGAACACAATGCTATCACCTAGACCTTCTGGAGCTCAGCCTTCTGCAATGAAAGAAATGCCAAGCAAGTTGCAAGAACGACCTTGTCCGACTAATGGAACTGGTCATAACCATACAGGTGCTTCTGTCAGTGGCAGTGCACCAGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCGTTCAGGAAAAACTCGATGGCCACCACCACCAAGAACAATGATGAAGTGGATGGAAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTAAGCATGGATGGGGCCCCCTATCTCAGGAAGGTAGATCTAAGAAGTTATACAACATACAAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTATGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAGGGATCTTCTGCATGGTTCAGAGTATGTTGTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCGTGGGAAATGTTTATTGATACCTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTGGATTATTCTGTACTCTTCGCAAAT 1053 0.4634 MSPPAVVTEEDGLSKASSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPSLCDEKKENMNLKATELRLGLPGSQSPGRDPDLFTLSSAKLDEKPLFPLLPTKDGICSSSQKTVVSGNKRGFADTIDGFSQGKFTGNTGMNTMLSPRPSGAQPSAMKEMPSKLQERPCPTNGTGHNHTGASVSGSAPASKAQVVGWPPIRSFRKNSMATTTKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYKELSSALEKMFSCFTLGQYGSHGAPGREMLSESKLRDLLHGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLDYSVLFAN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16974g00001 351 Gene3D - 231 349 - -
Mupr16974g00001 351 ProSiteProfiles PB1 domain profile. 235 339 IPR000270 GO:0005515
Mupr16974g00001 351 MobiDBLite consensus disorder prediction 1 27 - -
Mupr16974g00001 351 MobiDBLite consensus disorder prediction 146 200 - -
Mupr16974g00001 351 FunFam Auxin-responsive protein 230 347 - -
Mupr16974g00001 351 Pfam AUX/IAA family 75 343 IPR033389 -
Mupr16974g00001 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 342 IPR003311 GO:0005634|GO:0006355
Mupr16974g00001 351 SUPERFAMILY CAD & PB1 domains 234 336 - -
Mupr16974g00001 351 MobiDBLite consensus disorder prediction 176 198 - -
Mupr16974g00001 351 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16974g00001 Mupr-Chr16974 8977 13468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16974g00001 237 340 B3 DNA Binding Superfamily AT5G37020 31.731 1.36e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mupr16974g00001 AUX_IAA 2.2e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16974g00001 K14484 - gmx:547502 634.409