Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1690g00002 ATGAAAGCCACGAATTTTACGGTGATAGTGGAAAATGAGGAACAAGTAGAGCTATCTTTCACCAGAACATGGAATGCCTCACTTGAGGGGAAGCTTGCGCCACTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCATCCGGGTTCTACACCTATGCTATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTTGACAATACTAGGATCGCATTCAAGCCTAGGAAGGACAAGTTCCATTACATGTTTGTAGCGGACAACAGACAAAGATTTATGCCTCTGCCTGATGACCGGATACCCCCAAGAGGTCAAGTTCTGGCCTACCCTGAGGCTGTGCGCCTTGTTGATCCTGTGGAACCTGAATTCAAAGGAGAGGTAGATGATAAATATGAGTACGCGTGCGAGAGCCGATACAACCATGTTCATGGTTGGATATGCATTGATCCATCGAATTCCATTGGATTCTGGCTAATTACGCCAAGCAATGAGTTCCGATCTGCTGGACCTCTCAAGCAATATCTTACATCTCACGTGGGCCCCACCACACTCTCCGTATTTCATAGCACGCATTATTCAGGGACTGATCTGATAATGAAATTTGGGCTCAATGAGCCATGGAAGAAAGTCTATGGGCCCATATTCATATACCTAAATTCTCTATCTAATGGGTTTAGCCCGACCAAGCTCTGGGAGGACGCCAAACAACAGATGGTGAATGAAGTTGAAAGCTGGCCCTATACATTTCCAGCTTCCAAGGACTTTCTCCAATCTGACCAACGTGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCATCCCAGTTAGCGGTGCTTATGTGGGATTAGCAGCCATAGGAGATGCTGGATCTTGGCAAAGAGAATGTAAGGGTTATCAATTTTGGACCATTACCGATGATAAAGGCTATTTCTCAATTATTAACATACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGGTACATTGGTGATTATAAATTCGATAGGGTCATCAACGTAACTGCAGGTTGTGAAATTAATGTGAAAGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAAACTCTATGTCAACCATACAGACAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGAATTGTATCCAAAAAAAGACCTGGTTTACACTGTTGGCGTTAGTGACTACAAAAGAGATTGGTTCTTTGCTCAGGTTACCAGGTTGTGCAATAACTTCCCTTTGCTGTGCCGCAGGAGAAAAGACAATAACACTTACAAAGGAAGCACATGGCAAATTAATTTCAAGCTTGATTGTGTGAATACCAATGGAACCTACACATTGCGAGTGGCTCTCGCATCTGTCCATGCTGCTGAATTACAGATTCGGATAAACAATTTAGAAGGAAATCCGCCTTTATTTTCAAGTGGAGTGATTGGAAAGGAGAATACTATAGCTAGACATGGAATTCACGGTCTGTACTGGCTATACAGCATTGATGTACAAGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTCTAACGCAAGCAAGGGACACAAGTCCTTTTATAGGAATTCTGTATGATTATATTCGTTTAGAATACAAACGCTCAAGATAA 1728 0.4317 MKATNFTVIVENEEQVELSFTRTWNASLEGKLAPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKDKFHYMFVADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYEYACESRYNHVHGWICIDPSNSIGFWLITPSNEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGTDLIMKFGLNEPWKKVYGPIFIYLNSLSNGFSPTKLWEDAKQQMVNEVESWPYTFPASKDFLQSDQRGKVEGRLLVRDRYISDAFIPVSGAYVGLAAIGDAGSWQRECKGYQFWTITDDKGYFSIINIRPGDYNLYSWVTGYIGDYKFDRVINVTAGCEINVKELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHTDRFRQYGLWERYAELYPKKDLVYTVGVSDYKRDWFFAQVTRLCNNFPLLCRRRKDNNTYKGSTWQINFKLDCVNTNGTYTLRVALASVHAAELQIRINNLEGNPPLFSSGVIGKENTIARHGIHGLYWLYSIDVQGTLLVQGNNTIFLTQARDTSPFIGILYDYIRLEYKRSR 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1690g00002 575 Gene3D - 368 570 - -
Mupr1690g00002 575 CDD RGL4_C 372 570 - -
Mupr1690g00002 575 SUPERFAMILY Galactose-binding domain-like 367 571 IPR008979 -
Mupr1690g00002 575 FunFam Rhamnogalacturonate lyase B 258 357 - -
Mupr1690g00002 575 CDD RGL4_N 8 221 - -
Mupr1690g00002 575 Gene3D - 258 358 - -
Mupr1690g00002 575 Pfam Rhamnogalacturonate lyase family 2 128 IPR010325 -
Mupr1690g00002 575 Pfam Polysaccharide lyase family 4, domain III 370 569 IPR029411 -
Mupr1690g00002 575 CDD RGL4_M 261 360 IPR029413 -
Mupr1690g00002 575 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 571 - -
Mupr1690g00002 575 Pfam Polysaccharide lyase family 4, domain II 284 356 IPR029413 -
Mupr1690g00002 575 SUPERFAMILY Starch-binding domain-like 260 357 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1690g00002 Mupr-Chr1690 58110 61764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1690g00002 1 570 Polysaccharide Lyase AT1G09890 65.499 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1690g00002 K18195 - gmx:100786488 1061.98