LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr16860g00001	ATGGGAATCATTTTCTTAGTTCCTATGATTAGTTTGGTAAACCCACTTTCATTTCATTACCAAGGGTTTGAGTATGATGATGCCAGGATTGAAGGAGATGCTACTTTGTCACATTCACAAATCCAACTCACTGCCACCACAAGGTACCAAAGCAATGCTTACAGTGTTGGGAGAGTCACAAGTTTTGAGTTATTGCACCTGTGGGACATGAGCTCAGGAAATCTCACTGACTTCACTACCCAATTTTCCTTTGTCATTTTCTCAAATGATTCTTCTAGTTTTGGAGATGGCTTGGCTTTTTTCTTTGCAGATCCAAAGCTGCCACTTTCAAAGCAAATACAAGAAGGGGGTGGTCTTGGTCTTGTGGATGGTAACCAATTATTGAAGTCAACTTCACATCCATTTGTAGCAGTGGAGTTTGACACTCACCAAAATTCTTGGGATCCACCTGGCACTCATGTAGGTATAAATTTCAACTCTATGAGATCCAACATAACTGCTCCATGGTCCATTGATATTAGGCAAATGAAAGTTTATTGTTGTGTAATTGAGTACAATGCAAGTACTCATAATTTAAACGTTTCTTTCACTGGAAACAAAATCAATGGCAAGCCAATAAAAAGTCATATCTCATGCAATGTTGATTTGAGAGATTACCTACCAGAGTGGGTTATTTTTGGCTTCTCAGCTGCTACAGGATCTATGTTTGAGATGAACACACTGCAATCATGGTCATTCCATTCAAGTTTACAAAGTAATGAGAATGTGTCACGTCAGATACCTCCAATGGCAGCCTCACCAATTCCAAATCCTAGTCCTTCACCAATTGCCACTGCTAATATTAGCCCTACACAAGAGGACAACAAAGGTTTATTGATGGGGATAGAAATTGGTATAGGAATAGCTGCAAGTTTCCTTATTTTAGGCTTGGTATGTATTTTAATGTGGAAGAGGGCTAAAGGGAAAAAAGAAGATTCACTTTTTGATCTGAGCATGGATGATGAATTCCAAAAGGGCATTGGACCCAAGAGATTTTGCTATAAAAAATTGGCAAGTGCAACAAATAACTTTGCAGAGACACAGAAGATTGGACAAGGTGGTTTTGGTGGTGTTTATAAAGGCTATTTGAAAGACTTAAACTCCAACGTTGCTATAAAGAGGATATCAAGAGAATCTAGGCAAGGAATAAAGGAATATGTAAGTGAAGTTAAGATCATCAGCCAACTGAGGCATAGGAATTTAGTACAACTAATTGGTTGGTGCCACATGAAGAAAGATCTCCTCCTTATATATGAGTTCATGCAAAATGGTAGCTTAGATTCCCACCTATATCGCGGAAAAAGCATCTTGACATGGCAGATGAGGTACAACATTGCTATGGACTTGGCTTTGGCAGTTTTGTACCTTCATGAAGAATGGAAGCAGTGTGTGCTTCATAGGGACATCAAATCCAGCAATGTTATGTTGGACTCAAGTTTCAGTGCTAAGCTTGGGGATTTTGGCTTAGCTAGGCTGGTTGATCATGAGAAAGGATCACAAACCACAACTCTAGCAGGGACCATGGGCTACATAGCCCCTGAATATTTCACCATAGGGAAGGCTAGGAAGGAATCAGATATATACAGTTTTGGGGTTGTTTTGTTGGAGTTAGCCAGTGGAAGAAAACCAATTGACCTTAAAGCCAATGAAGGTCAAATAACCATATTTGAGTGGGTTTGGGAGCTCTATAGATTGGGAAAGTTACTTGAAGTAGTAGACCAAAAGCTTGGGGGAGCATTTGATGAGGAGCAAATGGAACATTTAGTGGTTGTTGGCCTTTGGTGTGCCAATCCAGATTATACAACTAGGCCATCTATAAGGCAAGTGATTCAAGTGCTTAAGTTGGAAGCTCCTTTACCAATTCTCCCACAGAAAACGCCCGAGCCATATTACCATTCTCCTCCAACTATGAGTACTATTTTTGCTTCAGTTTCTTCTCCCTCCGGCTACATAAGAAACCGATTTGAGACAAAATCAAAATCAATTCCTCTCACCATGCCACACTTTTTTTTGTAA	2055	0.3981	MGIIFLVPMISLVNPLSFHYQGFEYDDARIEGDATLSHSQIQLTATTRYQSNAYSVGRVTSFELLHLWDMSSGNLTDFTTQFSFVIFSNDSSSFGDGLAFFFADPKLPLSKQIQEGGGLGLVDGNQLLKSTSHPFVAVEFDTHQNSWDPPGTHVGINFNSMRSNITAPWSIDIRQMKVYCCVIEYNASTHNLNVSFTGNKINGKPIKSHISCNVDLRDYLPEWVIFGFSAATGSMFEMNTLQSWSFHSSLQSNENVSRQIPPMAASPIPNPSPSPIATANISPTQEDNKGLLMGIEIGIGIAASFLILGLVCILMWKRAKGKKEDSLFDLSMDDEFQKGIGPKRFCYKKLASATNNFAETQKIGQGGFGGVYKGYLKDLNSNVAIKRISRESRQGIKEYVSEVKIISQLRHRNLVQLIGWCHMKKDLLLIYEFMQNGSLDSHLYRGKSILTWQMRYNIAMDLALAVLYLHEEWKQCVLHRDIKSSNVMLDSSFSAKLGDFGLARLVDHEKGSQTTTLAGTMGYIAPEYFTIGKARKESDIYSFGVVLLELASGRKPIDLKANEGQITIFEWVWELYRLGKLLEVVDQKLGGAFDEEQMEHLVVVGLWCANPDYTTRPSIRQVIQVLKLEAPLPILPQKTPEPYYHSPPTMSTIFASVSSPSGYIRNRFETKSKSIPLTMPHFFL	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr16860g00001	684	PANTHER	-	45	633	-	-
	Mupr16860g00001	684	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	477	489	IPR008271	GO:0004672\|GO:0006468
	Mupr16860g00001	684	FunFam	Lectin-domain containing receptor kinase A4.3	434	646	-	-
	Mupr16860g00001	684	SUPERFAMILY	Concanavalin A-like lectins/glucanases	15	253	IPR013320	-
	Mupr16860g00001	684	ProSitePatterns	Protein kinases ATP-binding region signature.	363	386	IPR017441	GO:0005524
	Mupr16860g00001	684	CDD	STKc_IRAK	363	627	-	-
	Mupr16860g00001	684	ProSitePatterns	Legume lectins alpha-chain signature.	220	229	IPR000985	-
	Mupr16860g00001	684	ProSiteProfiles	Protein kinase domain profile.	357	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr16860g00001	684	FunFam	L-type lectin-domain containing receptor kinase IX.1	342	433	-	-
	Mupr16860g00001	684	FunFam	L-type lectin-domain containing receptor kinase IX.1	14	259	-	-
	Mupr16860g00001	684	Gene3D	Transferase(Phosphotransferase) domain 1	434	645	-	-
	Mupr16860g00001	684	Gene3D	Phosphorylase Kinase; domain 1	342	433	-	-
	Mupr16860g00001	684	CDD	lectin_legume_LecRK_Arcelin_ConA	16	250	IPR001220	GO:0030246
	Mupr16860g00001	684	Pfam	Legume lectin domain	16	255	IPR001220	GO:0030246
	Mupr16860g00001	684	ProSitePatterns	Legume lectins beta-chain signature.	136	142	IPR019825	-
	Mupr16860g00001	684	SMART	serkin_6	357	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr16860g00001	684	Gene3D	-	14	261	-	-
	Mupr16860g00001	684	Pfam	Protein kinase domain	358	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr16860g00001	684	SUPERFAMILY	Protein kinase-like (PK-like)	341	657	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr16860g00001	Mupr-Chr16860	2746	5203	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr16860g00001	6	645	Receptor kinase-like Gene Family	AT5G10530	45.077	4.60e-180	525

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Mupr16860g00001		Pkinase	8e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr16860g00001	-		-	gmx:100814713	1134.4