LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr16823g00001	ATGGGTCGTGTCAAACTTGAGATAAAGAGAATAGAGAACCCCACGAATCGACAAGTTACATTCTCCAAGCGTAGAAATGGCCTCATCAAGAAAGCCTACGAGTTATCCATCCTTTGTGATATTGATATCGCCGTTATAATGTTTTCTCCATCGGGACGTGTCAACCACTTTTCCGGTAGGAGGAGGATTGAGGATGTTTTCACTCGTTACATTAATCTTCCTGACCAAGAAAGAGATAACGCTGTAAGTTTTCCTGAGCTACCCTACCGCAGGGGTATTCAGAATAAGGAGTATTTGCTTAGGACCCTTCAGCAACTGAGAAGTGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCCGAGATTGAGGAACTCCAACAAGAAGTTAATAGGTTACAGCAGCAACTTCAAATGGCCGAGGAGCAGATAAGGTTATATGAACCCGACCCATTAAAGATGACATCTATGGCGGAACTGGAAAGCAGCGAAAAGCACCTTGTAGATGTCTTGACACGTGTCATACAGAGAAAGGAATATTTATTGAGCAACCATCTATCTTCATATGATCCATCTGGTATTCAGGGGATACCTACCTCTTTTGAGAATGTAGGTTGGTTGCAGGATGGGAGTCAAAACCATGCCCAGATTTTTGATGCATCTGCTCCTTTAGATCCTCTCAGGGACTTGTCTTCCACCGTGTACGGTTCATTTTCCCAAGGGACAAGTTCGAATGCTGATCCACGAGGCATGGGGGAGTGCCACGTGTCGAATCCAAGTGACGGGAACCTTCAAGCATGGCCTCAAGGCTACACGTTGTATCCTCATATTCAGCATGACATGGTGGGACCCGACATGCCAGACATGATGCCACATGGGCAGGTCAACCTCCCAATCACTGCCTCACACGTGGAACCACCCAAGAACGAAGCTGCAGAATTTGACCAGTCTAAACAACCTCAACCACAACCTCAACCTCAACCTCAACCTCATCATCATCATCATCAGCTTAATGCTCAATGA	1032	0.4574	MGRVKLEIKRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMTSMAELESSEKHLVDVLTRVIQRKEYLLSNHLSSYDPSGIQGIPTSFENVGWLQDGSQNHAQIFDASAPLDPLRDLSSTVYGSFSQGTSSNADPRGMGECHVSNPSDGNLQAWPQGYTLYPHIQHDMVGPDMPDMMPHGQVNLPITASHVEPPKNEAAEFDQSKQPQPQPQPQPQPHHHHHQLNAQ	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr16823g00001	343	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Mupr16823g00001	343	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	319	-	-
	Mupr16823g00001	343	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mupr16823g00001	343	MobiDBLite	consensus disorder prediction	287	343	-	-
	Mupr16823g00001	343	Gene3D	-	14	86	IPR036879	GO:0003677\|GO:0046983
	Mupr16823g00001	343	Coils	Coil	119	153	-	-
	Mupr16823g00001	343	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mupr16823g00001	343	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mupr16823g00001	343	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mupr16823g00001	343	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Mupr16823g00001	343	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Mupr16823g00001	343	FunFam	MADS-box transcription factor 41	13	92	-	-
	Mupr16823g00001	343	MobiDBLite	consensus disorder prediction	240	264	-	-
	Mupr16823g00001	343	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Mupr16823g00001	343	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr16823g00001	Mupr-Chr16823	1518	4998	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr16823g00001	1	304	Type I MADS-box Gene Family	AT1G22130	58.917	2.81e-120	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Mupr16823g00001		SRF-TF	5.7e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr16823g00001	-		-	pvu:PHAVU_008G170400g	584.719