Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1678g00003 ATGATTCTTTGCAAGTATCTTGAACTGCAAGAAGACACATCAAACAGTGGCCCCATGGAATTATGTGCCGGGGGAGGGTCCAGGGAAATGGGGAGCAATAGTATGTTTCGTTATGCAGATGGAGTGGACAAGTTGTTGATGTTCTTTGGGACCTTGGGAAGCCTTGGAGATGGACTACAGACCCCTCTCACGATGTACATTCTTAGTGATGTCATCAATGCCTATGGAGATAAGAATAGTCATTTGACAAAGCATGATGTCAACAAGTATGCGTTGAGGCTTTTTTGTGCCGCTATTGGAGTTGGACTTTCAGCTTTTGTTGAAGGAATATGTTGGACAAGAACTGCTGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAGTCAGTCCTAAGACAAGAAGTTGGTTTCTTTGATACCCAAACTTCTGGTTCTTCAACAACCTACCAAGTTGTCTCACTCATTTCCTCAGATGCAAATACAATCCAAGTTGTCTTGTGTGAGAAGATACCTGACTGCCTGGCTTACATGTCAACATTCCTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTACATTGGCAGCAATACCACTCTCTGTCATGTTCATTGTTCCAGCACTTGTATTTGGGAAGATCATGTTGGATCTTGCAATGAAAATGATTGAGTCCTATGGGGTTGCTGGTGGGATAGCAGAACAGGCAATATCTTCAATAAGAACTGTTTATTCATATGTTGGGGAGAATCAAACACTAAACAGATTCAGCAGTGCACTTCAAAAAACTATGGAATTTGGAATAAAGCAAGGTTTTGCAAAGGGGTTGATGTTGGGAAGTATGGGAGTTATTTATATAAGTTGGGGATTTCAGGCTTGGGTTGGAACATTTCTGATCACTAAAAAAGGAGAACAAGGTGGCCATGTATTTGTAGCTGGCTTCAATGTCCTCATGGGAGGCCTGAGCATTTTAAGTGCCCTTCCAAATTTAACTGCCATCACAGAAGCAACTGCAGCCGTCACTCGTCTTTTCGAAATGATTGATAGGGTGCCAACCATAGATTCTGAAGATAAGAAAGGAAAGGCCTTATCATATGTGAGAGGGGAAATTGAATTTCAAGACATCTACTTCTGTTACCCATCTAGGCCAGACTCACCAGTTTTGCAGGGATTCAATCTCACCATCCCAGCAGGCAAGAGTGTAGGCCTTGTGGGAGGTAGTGGCTCAGGTAAATCCACTGTCATTGCACTGCTTGAAAGGTTTTATGACCCTGTTGAGGGAGTAATACTCTTGGATGATCACAAGATTAATAGACTTCAGTTGAAGTGGTTGAGATCTCAATTTGGCCTAGTCAATCAAGAGCCTGTTCTCTTTGCCACTTCCATAAAAGAGAATATATTGTTTGGAAAAGAAGGGGCTTCAATGGAAAGTGTGATAACTGCGGCTAAAGCAGCTAATGCACATGATTTCATTGTCAAGCTGCCAGATGGATATGAAACTCAAGTTGGGCAGTTTGGATTCCAATTGTCTGGTGGACAGAAGCAACGCATTGCCATAGCAAGAGCCTTACTAAGGGATCCAAAGGTTCTCTTGCTTGATGAAGCTACCAGTGCACTTGATGCTCAATCTGAAAGAGTGGTACAAGCAGCCATTGATCAAGCTTCAAAAGGAAGGACAACAATCATCATTGCTCACCGTTTGTCAACAATTCGAACGGCTCACATGATAGCAGTTCTTCAAGCTGGGAGAGTGGTTGAATCAGGTACTCATAATGAGCTCATGGAATTGACTGATGGTGAGTATGCTCACATGGTAGAGTTGCAGCAATTAACAACTCAAAATGATGAATCCAAACCTTCTAATCTTCAAATAGAAGCAAAGAGCTCCCACAGAATGAGCATTCCTCAAAGTCCAGTTGTGAGTTTCAGATCAAGCACTGTAGGCACTCCAATGTTGTATCCCTTCAGCCAGGGATTTTCCATGGGAACACCATACTCCTACTCTATCCAATATGACCCTGATGATGATAGTTTTGAAGATAACTTGAAGAGACCAAATCATCCAGCTCCTTCGCAGTGGCGTTTGCTGAAAATGAATGCACCTGAGTGGGGAAGAGCAGTGCTAGGAATCTTAGGAGCAATAGGGTCAGGAGCAGTACAACCTGTGAATGCATACTATGTAGGAACACTTATATCAGTTTACTTTGAAACTGAAAGCTCTAAGATGAAGTCTAAAACTAAATTCCTGGCCCTTGTTTTCTTAGGAATTGGTGTTTTCAACTTCTTCACTAGCATTCTCCAACACTATAACTTTGCATTCATGGGAGAGAGGTTGACCAAAAGAATAAGAGAAAAGATACTAGAGAAGTTGATGACTTTTGAGATAGGGTGGTTTGATCATGAAGAGAATACAAGTGCATCCATTTGTGCAAGATTATCCTCAGAAGCCAACTTGGTTCGTTCCCTCGTCGGCGACAGGATGTCTTTGTTATCCCAAGCAGTTTTTGGGTCTATCTTTGCCTACACTCTAGGACTTGTGCTCACATGGAGGCTTTCCCTTGTGATGATTGCAGTGCAACCATTAGTCATTGGAAGCTTTTACTCAAGAAGTGTGTTGATGAAGAGCATGGCAGAGAAGGCTCGCAAAGCGCAAAGGGAGGGAAGCCAACTTGCTAGTGAAGCTGTTATAAACCATAGAACCATAACTGCCTTCAGCTCTCAGAAAAGAATGTTGGCACTTTTCAAATCCACAATGGTGGGGCCTAAACAGGAGAGTATTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGTTCCCAATTTTTCAACACTTCATCAACAGCATTGGCTTATTGGTATGGAGGGAGGCTCCTGATAGATGGACTCATAGAATCAAAGCACCTCTTTCAAGCATTTTTAATACTACTCTTCACTGCATACATTATTGCTGATGCTGGAAGCATGACTTCTGACTTGTCCAAAGGAAGCAGTGCAGTTGGATCAGTTTTTGCAATCCTAGACAGGAAAACTGAGATTGATCCTGAGACCTCATGGGGAGGTGAGAAAAAGAGGAAGATAAGGGGCAGAGTCGAGCTTAAAAGTGTTTTCTTTGCATATCCAACTAGACCTGATCAAATGGTTTTCAAGGGTCTGTGTCTTAAGGTCGAAGCTGGGAGAACAGTGGCTCTAGTGGGACACAGTGGTTGTGGCAAATCAACTGTTATTGGTCTTATTGAAAGGTTTTATGATCCTGCAAAGGGAACGGTGTGCATTGATGAACAAGACATCAAGTCCTTTAATTTGAGAATGTTGAGGTCACAAATTGCGTTAGTGAGTCAGGAGCCAACCCTTTTTGCTGGCACCATTCGAGAAAACATTGCCTATGGGAAAGAAAACACAACTGAATCTGAGATAAGAAGGGCTGCATCTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAATGAAGGGTATGAGACATACTGTGGAGAAAGAGGAGTTCAGCTATCAGGTGGCCAGAAACAAAGAATAGCCTTAGCTAGAGCCATACTGAAGAATCCTGCAATACTGCTTCTGGATGAGGCTACTAGTGCACTTGATAGTGTGTCAGAGATCTTGGTCCAAGAAGCACTAGAGAAGATAATGATTGGAAGAACATGCATAGTAGTGGCACACAGGCTATCTACAATACAAAAATCTAACTACATTGCTGTGATTAAGAACGGAAAGGTTGCAGAACAAGGTTCACATAACGAATTGATTTCACTTGGACGTGATGGTGCATACTTTTCTCTTATGCGCGCCCCCACCGTAAGAAACCTGTGCACCCTCAGCTCCCTCTTCCGCTCACAGTTGAAAACCCGCAAACCCAACACCAACGCTGTTCCCTTCACAAAACCTCCTCCTGACTCCGAACACGATTTGCGTTCCCAACTGCACCTCTCAGAACTCCACCTCACTCGTGACTCTTCCCAAGCTACACAGGACAAGAGGTCAGAGGAAATTGATGATGATGAAGAAAAAGGGAAAACTGCAGTAGATATACCATGGATACCGGACCTGTCTCATGGTAATTTATTGGTGAAACGGAAGGAGGTTGCTCGGGAGAGGAAACAGAAGTGGATTTTTAAGTACACGAGTGATGACCGTTTTGACAGGTTAATTAAATTGTGTGCAGATAAATTAGGAACTGGAAAGACCGTTAATGTGTTTGGTCACTTGGGTCGAGAAACTGGTGTGAAAGAGTACAATGCATTGATAAAAATGTGCATAAAGAAGGCTAGGGTGACTGATGACGAATTCATTGCTGTAAGAGAAATGAGCAAGGCTTTTCACCTTTTCAAATCAATGAGGGATCTTGGGTATCCACTAGAAGAGCAAACGTATGGTGCACTTCTTCGGTATATAGTTGATATGGGTATGGTTCAAGAATTTCAACTTTTCTCTGATGTTATCAAAGCCGAGAATCCTAGTTCAGCTTCGCGATTGGGTTACTATGAAATGTTGCTGTGGTTAAGAGTTGACAATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTTGAAGATAGTGAAGATACTTCTGCATTAAGAGAAAGTTACTTGATGGCTCTTTGTGAAAGTGATCGGAAGATTCAGATTTTGGATGTGGTGAAGAATATAGACATGACAAAGCTTTCATCTGCAGAATCTATTGCAAATATATTCCAATCATTAGGCAGGCTACTGCTGGAATCTGTTGTGGACAATTTACTTTTGGATTTGAGAGCACGTGATCAAGATGCAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATTCCAAATTTAGCGGTTGAGGATATCATCTCAAAAGTCAAGAATATGCATGGATTACTGGAAGTGTTGCCTTCATCCTCATCATATGAAAAGCTCATTTTGCATTGCTGTGGCTTAGACAAGGTGGGCGTAGCTCTTGATATTGTTGAAAAAATGTGTGAAGCTGGCTTTACCTTGTCAACTGAGGTGTTACAATTCATAATACAAATCTGTGAGGAATCTTATGAATATATTTTGGTCCATCAAATCTATTCCATAATATGTCGCTATCATTTGGAGTTGAATGGTGAAATATGCAGGTGTTTGGTACACTTTTGTGTGAGGATGAAAGATTTTGAAGGTGCATACAAGATGATTGATGACTTAAAGGAAATGAATTTCAAACCTACGACAAACATGTACAATGCTATAATGGCAGGGTATTTTCGAGAGAAGAACATCCATGGTGGGTTGAGGGTCCTCAAGCACATGCTAGGTGCCAATGTAAAACCTGATTCTCAGACATTCTCCTATTTGATTTCCAATTGTGAAACAGAAGAGGATATAATCAAGTATTGTGAAGAAATGAAGCAATCTGGAGTCCAAGCTACAAAACAAATTTTTATGTCCCTTATTAATTCATATGCAACTTGTGGTAAATTGGAGAAGGCAAAACAGGTAGTTTTAGATCCAAACATACCAAGCAAAAGCTTAAATGAAATCAAGAGTGTACTTGTCTCAGCTCTTGCCTCACATGGGCAATTGTCCGAGGCTCTTATTGTATATGAGGAGATTAAGAAAGGTGGACACAATTTGGAGCCAAAAGCTGTTATAAGTCTGATTGAGGAGTTCACTCAATTCAATGGGGAGTTGGATGAGTTGCTGCTTCTACTTAAGGAAGTGAGTGATCTAGACTATTGGGTTGATGGTTGCTTCAAAGTTATCATGTACAGTATACGGAACAAGAATTTGAGTTCTGCTATTCTATTGTTCAAGCAACTCAAGGATAAGTTCGAAAATGATGAAATAGTAATGGAAGCTCTTTTTGACGCGGTATTTTCTCTAATTGCAGGATCTGAGTCCACTCATTTACAGATTGGGCTGGACTTGCTTTGGGCAATCAAGGATGAGCTTGGACTTATGACTTCACGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTGGAGATTTGAATAATGCTCGCTTGATTTGGAGAGAGTATGAGGTTGCTGGATATCCTTACAATGTATTAAGTTACTTGAGAATGTATCAGGCACTTTTAGCAGCAGGAGATGATAGATCTGCTCACTTTATGCTTAAGAAAATTCCACAAGATGATGCCGAGGTTTGTTCTGTCATCATAGCATGTCAGGAAACTTATAGTGGTGTTATATCTGTGGGAGGGAAGAAGAAAAGGCAAGGAAAAAGAAAGAAGGAAGATATTACTAAGAATTAA 6276 0.4119 MILCKYLELQEDTSNSGPMELCAGGGSREMGSNSMFRYADGVDKLLMFFGTLGSLGDGLQTPLTMYILSDVINAYGDKNSHLTKHDVNKYALRLFCAAIGVGLSAFVEGICWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTSGSSTTYQVVSLISSDANTIQVVLCEKIPDCLAYMSTFLFCHIFAFVLSWRLTLAAIPLSVMFIVPALVFGKIMLDLAMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALQKTMEFGIKQGFAKGLMLGSMGVIYISWGFQAWVGTFLITKKGEQGGHVFVAGFNVLMGGLSILSALPNLTAITEATAAVTRLFEMIDRVPTIDSEDKKGKALSYVRGEIEFQDIYFCYPSRPDSPVLQGFNLTIPAGKSVGLVGGSGSGKSTVIALLERFYDPVEGVILLDDHKINRLQLKWLRSQFGLVNQEPVLFATSIKENILFGKEGASMESVITAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRTAHMIAVLQAGRVVESGTHNELMELTDGEYAHMVELQQLTTQNDESKPSNLQIEAKSSHRMSIPQSPVVSFRSSTVGTPMLYPFSQGFSMGTPYSYSIQYDPDDDSFEDNLKRPNHPAPSQWRLLKMNAPEWGRAVLGILGAIGSGAVQPVNAYYVGTLISVYFETESSKMKSKTKFLALVFLGIGVFNFFTSILQHYNFAFMGERLTKRIREKILEKLMTFEIGWFDHEENTSASICARLSSEANLVRSLVGDRMSLLSQAVFGSIFAYTLGLVLTWRLSLVMIAVQPLVIGSFYSRSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPKQESIRQSWISGFGLFSSQFFNTSSTALAYWYGGRLLIDGLIESKHLFQAFLILLFTAYIIADAGSMTSDLSKGSSAVGSVFAILDRKTEIDPETSWGGEKKRKIRGRVELKSVFFAYPTRPDQMVFKGLCLKVEAGRTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKSFNLRMLRSQIALVSQEPTLFAGTIRENIAYGKENTTESEIRRAASLANAHEFISGMNEGYETYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMIGRTCIVVAHRLSTIQKSNYIAVIKNGKVAEQGSHNELISLGRDGAYFSLMRAPTVRNLCTLSSLFRSQLKTRKPNTNAVPFTKPPPDSEHDLRSQLHLSELHLTRDSSQATQDKRSEEIDDDEEKGKTAVDIPWIPDLSHGNLLVKRKEVARERKQKWIFKYTSDDRFDRLIKLCADKLGTGKTVNVFGHLGRETGVKEYNALIKMCIKKARVTDDEFIAVREMSKAFHLFKSMRDLGYPLEEQTYGALLRYIVDMGMVQEFQLFSDVIKAENPSSASRLGYYEMLLWLRVDNEEMIRDICEYITVEDSEDTSALRESYLMALCESDRKIQILDVVKNIDMTKLSSAESIANIFQSLGRLLLESVVDNLLLDLRARDQDADNISNFIVSYAVSIPNLAVEDIISKVKNMHGLLEVLPSSSSYEKLILHCCGLDKVGVALDIVEKMCEAGFTLSTEVLQFIIQICEESYEYILVHQIYSIICRYHLELNGEICRCLVHFCVRMKDFEGAYKMIDDLKEMNFKPTTNMYNAIMAGYFREKNIHGGLRVLKHMLGANVKPDSQTFSYLISNCETEEDIIKYCEEMKQSGVQATKQIFMSLINSYATCGKLEKAKQVVLDPNIPSKSLNEIKSVLVSALASHGQLSEALIVYEEIKKGGHNLEPKAVISLIEEFTQFNGELDELLLLLKEVSDLDYWVDGCFKVIMYSIRNKNLSSAILLFKQLKDKFENDEIVMEALFDAVFSLIAGSESTHLQIGLDLLWAIKDELGLMTSRQCLDFLLSACANAGDLNNARLIWREYEVAGYPYNVLSYLRMYQALLAAGDDRSAHFMLKKIPQDDAEVCSVIIACQETYSGVISVGGKKKRQGKRKKEDITKN 2091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1678g00003 2091 Gene3D Tetratricopeptide repeat domain 1791 1915 IPR011990 GO:0005515
Mupr1678g00003 2091 Gene3D Tetratricopeptide repeat domain 1636 1790 IPR011990 GO:0005515
Mupr1678g00003 2091 Gene3D Tetratricopeptide repeat domain 1916 2088 IPR011990 GO:0005515
Mupr1678g00003 2091 MobiDBLite consensus disorder prediction 1323 1344 - -
Mupr1678g00003 2091 SUPERFAMILY ABC transporter transmembrane region 695 1015 IPR036640 GO:0005524|GO:0016020
Mupr1678g00003 2091 PANTHER ABC TRANSPORTER B FAMILY 33 767 IPR039421 -
Mupr1678g00003 2091 CDD ABC_6TM_Pgp_ABCB1_D2_like 698 1014 - -
Mupr1678g00003 2091 FunFam ABC transporter B family member 4 1022 1275 - -
Mupr1678g00003 2091 CDD ABC_MTABC3_MDL1_MDL2 1032 1270 - -
Mupr1678g00003 2091 ProSitePatterns ABC transporters family signature. 1171 1185 IPR017871 GO:0005524|GO:0016887
Mupr1678g00003 2091 Gene3D - 1022 1275 IPR027417 -
Mupr1678g00003 2091 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 709 996 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mupr1678g00003 2091 MobiDBLite consensus disorder prediction 1325 1344 - -
Mupr1678g00003 2091 Pfam ABC transporter 1051 1199 IPR003439 GO:0005524
Mupr1678g00003 2091 Gene3D Tetratricopeptide repeat domain 1364 1502 IPR011990 GO:0005515
Mupr1678g00003 2091 Pfam PPR repeat 1848 1873 IPR002885 -
Mupr1678g00003 2091 CDD ABC_MTABC3_MDL1_MDL2 372 610 - -
Mupr1678g00003 2091 Pfam ABC transporter transmembrane region 710 981 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mupr1678g00003 2091 Pfam ABC transporter transmembrane region 47 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mupr1678g00003 2091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1269 IPR027417 -
Mupr1678g00003 2091 SUPERFAMILY ABC transporter transmembrane region 35 356 IPR036640 GO:0005524|GO:0016020
Mupr1678g00003 2091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 611 IPR027417 -
Mupr1678g00003 2091 Pfam Pentacotripeptide-repeat region of PRORP 1639 1785 IPR033443 -
Mupr1678g00003 2091 Gene3D - 370 623 IPR027417 -
Mupr1678g00003 2091 Gene3D ABC transporter type 1, transmembrane domain 106 1000 IPR036640 GO:0005524|GO:0016020
Mupr1678g00003 2091 SMART AAA_5 399 584 IPR003593 GO:0016887
Mupr1678g00003 2091 SMART AAA_5 1059 1245 IPR003593 GO:0016887
Mupr1678g00003 2091 FunFam ABC transporter B family member 19 362 611 - -
Mupr1678g00003 2091 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1032 1268 IPR003439 GO:0005524
Mupr1678g00003 2091 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1706 1740 IPR002885 -
Mupr1678g00003 2091 FunFam ABC transporter B family member 15-like 35 369 - -
Mupr1678g00003 2091 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 372 608 IPR003439 GO:0005524
Mupr1678g00003 2091 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mupr1678g00003 2091 FunFam Putative ABC transporter B family member 8 672 1019 - -
Mupr1678g00003 2091 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1741 1775 IPR002885 -
Mupr1678g00003 2091 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524|GO:0016887
Mupr1678g00003 2091 Pfam ABC transporter 390 539 IPR003439 GO:0005524
Mupr1678g00003 2091 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 345 - -
Mupr1678g00003 2091 NCBIfam pentatricopeptide repeat 1709 1741 IPR002885 -
Mupr1678g00003 2091 NCBIfam pentatricopeptide repeat 1744 1777 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1678g00003 Mupr-Chr1678 17516 48317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1678g00003 32 613 Calmodulin-binding Proteins AT2G36910 36.060 5.83e-99 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1678g00003 K05658 - gmx:100788127 2294.62