Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16788g00001 ACAGTGCTTTCTTCTGCATTGCTTCTCTGCAAATCTTTCGCCGCTTTCTGCGTCCATTTGGGTCATTCCACCGCTTCTGAAATTTTGGGTATTCTCTTTCTTCGAGCTGAGACACAGTCTCTAAGGCCTCAAAGATTGCTTTTTGATAACTTTCCAGTGGAAAACCTCGTTGGTCACGCTTCTCGAGGAGCCCAGGAAGAGAACACTGGGTTTCAGCCTGAAATTATTCGAGTTACGTGGGTTTCCCTTGATCTCAGCCGAGAATCAGTGTCACTATTGTCGATGGAACTCAACTGGGCGTTATATCGGCTGGCTAGAGAGAAGCTTGGTCAAGAGACTAACAGCACACGTGCACCTGATCAATGTTCCTCGCCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGCCAGATTTCGAGCCAGGGTCAGTCCAGTAGAGTTAGAAGGAGCCCCCCTTGCAGGAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCTAAGGGTAGAGATAAAGATGTAGGATATGGTGCCAACACTAGGATGGGAAAATTTGGGGATTTAGATCCTGGTTTGAATGAAATTCCAATGTCGGTGCCATCCAGCGAAGTGGATTTCTGTCAAGATGAAGATGTGTTGCCTTGGTCGGATTATACAACAATGGATGGTTCCTTGCAACATGAATATGGTTCTGATTTCCTCCCTGCCTCAAATAGTTTTACTCTATTGGATAAAAAAAGTAATGGCAATATGGCATTTAGGGATTCTCATAAAACTTGTGAAGAACAAGGGAATGTGTTCAAGGGTTCTTCAGCTGAACAGGTTGAGACTGCTAGACCTAAAGCTAGCACCAGTCAGTTATATCCCCCATCATTGCATCAATGTGAGACATCATTTGTATGTGCTAGATCCAGAACATCGGATATAACTGAAAATAATAATACGAGTAATGCAAACCAGGATGCCCCTTATGGCGAAATTACTCATATTCTGTCTTCCTCAACTGATTTTTCTAGCGTGAAGGTGGCGAAGCAAGATCCACCTATGCCTAGCAATGGTTCCAGTTCCACCGTAATGAATTTCTCGCATTTTGCTAGGCCTGCTGCTATTGTTAGAGCTAATCTTCAGAACATCAGCTTTAAGTCTGGTTTGTCTTCAGCAAGATCAGACAGTATGGAAATTAAGAATAAAGGTGCTGCTGCAACTAGCAGCAATCCTCCTGAATCAATTCTTGTTGATTCAAGTGGTGAAAGTTCGAAGGAACCTATCATGCACTGCCAGCAGCAGGTTGAGGAGCAATCCAAGGTTGATTTGAATTCTTTGCAGCCAAAATCTGTTGAACAGAATGCTGTGCCTCCTAAGCAGTCAGAGCCTGCATGTAAAGAGAGGGGCACTAAGATTGATCAAACTCCCAACAAAGTTCTTGGTGACAGTGGCGCTAAAGGACAGATAGCTGCTGAAAAATGCATAGAGCCAGTAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGATGCAGACAGAGGTTCAGATGAGCCAATTAAAATTTTGAAGCGAAAAAGAAAGAATATCGAGGACTCTGAGTGCCATAGTGAAGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAGGCAGCTAGTGGGCGAGGAGGTCCAGGTTCCAAGAGAAGCCGTGCAGCTGAGGTGCACAATCAATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGCGCGTTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTCTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGATTTGGTATGGGTTATGGGATGGGCATGCCTGACATGAATGGTGGATCTTCAAGATTCCCAATGATTCAGGTGCCCCAAATGCAAGGAACTCATATCCCTGTTGCAAATATGTCTGGACCCACTGCTTTACATGGGATGGCCAGACCAAATACTCCAGGGTTTGGACTTCCTGGACAAGGACATCCCATGCCAACGCCGCAAGTTCCTGTATTTCCTTTTTCAGGAGGGCCTCTCATGAACTCATCGGCTGTGGGACTGCATGCAAGTGTTGAAACCGTGGATTCAGCTTCCGTGTCTGGCTTAAACGATCAAATGCCAAATGTTGAGCCTCAAGTTAAGCAAAGCACTGCTGGCCGTGATTCAACAAATCAGATGCCTACCCAGTGTGAAGCAGCAGCTGTTGGATTTGAGCAATCTCCTTTGGTGCATAGTAGTGGTCATGCCTCCGAGTCTAATGAAAATGGAGCTGTTAATCCTGGTCCTGTTATGATTGATAAGACCGTGGCCAATGGAAGTTCTAAAAATTTGAGTCCAATAGTGACACAGGATATTATATTTCAGTCATCG 2517 0.447 TVLSSALLLCKSFAAFCVHLGHSTASEILGILFLRAETQSLRPQRLLFDNFPVENLVGHASRGAQEENTGFQPEIIRVTWVSLDLSRESVSLLSMELNWALYRLAREKLGQETNSTRAPDQCSSPENDFFELVWENGQISSQGQSSRVRRSPPCRSLPSHCLPSHSPKGRDKDVGYGANTRMGKFGDLDPGLNEIPMSVPSSEVDFCQDEDVLPWSDYTTMDGSLQHEYGSDFLPASNSFTLLDKKSNGNMAFRDSHKTCEEQGNVFKGSSAEQVETARPKASTSQLYPPSLHQCETSFVCARSRTSDITENNNTSNANQDAPYGEITHILSSSTDFSSVKVAKQDPPMPSNGSSSTVMNFSHFARPAAIVRANLQNISFKSGLSSARSDSMEIKNKGAAATSSNPPESILVDSSGESSKEPIMHCQQQVEEQSKVDLNSLQPKSVEQNAVPPKQSEPACKERGTKIDQTPNKVLGDSGAKGQIAAEKCIEPVVASSSVCSGNDADRGSDEPIKILKRKRKNIEDSECHSEDVEEESVGVKKAASGRGGPGSKRSRAAEVHNQSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPMGVGMHMGFGMGYGMGMPDMNGGSSRFPMIQVPQMQGTHIPVANMSGPTALHGMARPNTPGFGLPGQGHPMPTPQVPVFPFSGGPLMNSSAVGLHASVETVDSASVSGLNDQMPNVEPQVKQSTAGRDSTNQMPTQCEAAAVGFEQSPLVHSSGHASESNENGAVNPGPVMIDKTVANGSSKNLSPIVTQDIIFQSS 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16788g00001 839 SMART finulus 562 611 IPR011598 GO:0046983
Mupr16788g00001 839 MobiDBLite consensus disorder prediction 395 480 - -
Mupr16788g00001 839 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 553 616 IPR036638 GO:0046983
Mupr16788g00001 839 FunFam Basic helix-loop-helix transcription factor 551 614 - -
Mupr16788g00001 839 MobiDBLite consensus disorder prediction 140 173 - -
Mupr16788g00001 839 MobiDBLite consensus disorder prediction 522 541 - -
Mupr16788g00001 839 Coils Coil 562 582 - -
Mupr16788g00001 839 Gene3D - 551 614 IPR036638 GO:0046983
Mupr16788g00001 839 MobiDBLite consensus disorder prediction 395 452 - -
Mupr16788g00001 839 Pfam Helix-loop-helix DNA-binding domain 560 606 IPR011598 GO:0046983
Mupr16788g00001 839 PANTHER TRANSCRIPTION FACTOR PIF3 101 775 IPR044273 GO:0003700|GO:0006355
Mupr16788g00001 839 Coils Coil 516 536 - -
Mupr16788g00001 839 MobiDBLite consensus disorder prediction 522 571 - -
Mupr16788g00001 839 CDD bHLH_AtPIF_like 556 618 IPR047265 -
Mupr16788g00001 839 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 556 605 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16788g00001 Mupr-Chr16788 6629 11150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16788g00001 99 685 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.436 4.67e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr16788g00001 HLH 8.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16788g00001 K12126 - gmx:100794974 1160.98