Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16702g00001 ATGGCAGATGAGTATACCATGGCTTTTCCAAATCCATCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAAATAGAGATCAAGAGGATTGAGAACACCACCAATCGCCAAGTCACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAAGCGTATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGGTATTTGCTTAGCTTTGTGCCTTTTCTTTTAAATTTCTTTTCACATTTTTCTTCCCTTCTCACAAGTCCTTTTGAGCTTTTGTGGAGAGGGAAGTTAATTAGAAATGATCATTTTGGTTTCTCTTTGGGGACTTTGGCAAAAGACAGTGAAAGAAGTGATGAGCCAATAAGAGTGACACAATACATTTCACCTCTGTTGAGACAATGTACGACAATTGAGATAGCCAATAGGAGAGTTCTGAGTATTTGGCTTCTTCCATGCAATGGGAAGCGTAAAACTATTGCTGCTGCTGCTATAGCAGAAGCTGAAATGGACGGCTGTGATGTTCACAGACTTTCAGACAGAAAAGACTGA 600 0.4167 MADEYTMAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNRYLLSFVPFLLNFFSHFSSLLTSPFELLWRGKLIRNDHFGFSLGTLAKDSERSDEPIRVTQYISPLLRQCTTIEIANRRVLSIWLLPCNGKRKTIAAAAIAEAEMDGCDVHRLSDRKD 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16702g00001 199 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Mupr16702g00001 199 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Mupr16702g00001 199 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Mupr16702g00001 199 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Mupr16702g00001 199 ProSitePatterns MADS-box domain signature. 24 78 IPR002100 GO:0003677|GO:0046983
Mupr16702g00001 199 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Mupr16702g00001 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
Mupr16702g00001 199 CDD MADS_MEF2_like 23 81 IPR033896 GO:0000977|GO:0045944
Mupr16702g00001 199 Gene3D - 34 88 IPR036879 GO:0003677|GO:0046983
Mupr16702g00001 199 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 82 - -
Mupr16702g00001 199 SUPERFAMILY SRF-like 23 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16702g00001 Mupr-Chr16702 1431 4050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16702g00001 6 81 MADS-box Gene Family AT3G58780 77.632 7.05e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr16702g00001 SRF-TF 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16702g00001 K09264 - gmx:732595 150.214