Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16652g00001 ATGGGCCTGATCCTTAAGGCCCATGATCTAGCAGCACTCATATACAAATTAGGGTTTTATAAACAACCTCCCTTCTTAAGTGCCGCAGCAACTCTCTCAGTTTCTTCAGTTTGGTGCCGTAGCGTTGGAGCCCTAGCTAGAGGATTGAAGAAACACTTGAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAGCTTGGTGGTGCCTTTGCGCCTAAGCCCTCATCTGGACCACACAAATCGAGGGAATGCCTTCCCCTCATACTTATCCTGCGTAACCGGCTGAAGTATGCTCTGACATACCGTGAAGTCATTGCTATTCTGATGCAGCGACATGTTCTTGTTGATGGCAAAGTCAGGACAGACAAGACATATCCTTCTGGTTTCATGGATGTTGTATCTATCCCTAAAACAAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCAGTCAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGGCAGAAAGGTATCCCATACCTTAACACCTATGATGGGCGTACCATCCGATACCCAGACCCTCTCATCAGGGCTAATGACACAATCAAACTGGACCTGGATGAAAACAAGATTGTAGATTTCATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGGAATAGGGGGCGAGTTGGAGTGATCAAGAGCAGAGAAAAGCATAAGGGAAGCTTTGAGACAATCCACGTTCAGGATGCCACTGGGCATGAATTTGCAACTCGAATGGGCAATGTGTTCACCATTGGCAAGGGGACAAAGCCATGGGTATCACTGCCCAAGGGTAAGGGTATTAAGCTATCTATCATTGAGGAAGCTAGGAAGAGGATTGCCGCCCAGCAAGCAACTGCTGCTTAA 927 0.4693 MGLILKAHDLAALIYKLGFYKQPPFLSAAATLSVSSVWCRSVGALARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLDENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKSREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRIAAQQATAA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16652g00001 308 CDD S4 95 156 - -
Mupr16652g00001 308 Pfam Ribosomal family S4e 139 213 IPR013845 -
Mupr16652g00001 308 SMART s4_6 86 150 IPR002942 GO:0003723
Mupr16652g00001 308 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 47 298 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mupr16652g00001 308 FunFam 40S ribosomal protein S4 219 289 - -
Mupr16652g00001 308 Pfam 40S ribosomal protein S4 C-terminus 256 302 IPR032277 -
Mupr16652g00001 308 SMART kow_9 218 245 IPR005824 -
Mupr16652g00001 308 Gene3D - 219 289 IPR014722 -
Mupr16652g00001 308 FunFam 40S ribosomal protein S4 45 161 - -
Mupr16652g00001 308 Gene3D - 45 161 IPR036986 GO:0003723
Mupr16652g00001 308 ProSiteProfiles S4 RNA-binding domain profile. 86 148 - -
Mupr16652g00001 308 FunFam 40S ribosomal protein S4 166 216 - -
Mupr16652g00001 308 Hamap 30S ribosomal protein S4e [rps4e]. 51 282 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mupr16652g00001 308 Pfam KOW motif 221 254 IPR005824 -
Mupr16652g00001 308 Pfam S4 domain 91 134 IPR002942 GO:0003723
Mupr16652g00001 308 CDD KOW_RPS4 219 273 IPR041982 -
Mupr16652g00001 308 ProSitePatterns Ribosomal protein S4e signature. 52 66 IPR018199 -
Mupr16652g00001 308 Gene3D - 166 216 IPR038237 -
Mupr16652g00001 308 Pfam RS4NT (NUC023) domain 47 83 IPR013843 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16652g00001 Mupr-Chr16652 1404 3644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16652g00001 45 305 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.805 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16652g00001 K02987 - gmx:100795220 512.686