Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16648g00002 ATGGCTGCTACGGTTTCTGTTTCGTCTTCTGTCTGCAACAGAATATCCAACCTCTCCTTCACCCACTCTTCCATTTCACTCACCACTAACTTCCCTCAAAGACCCATATCCCAAAAACCTCTCACTCTCAACTTTAAGCCCCAAAGTTTGAGTCTTTCCTTTCTCCCACTTCACCGTCTTCCCCCACCTTCCGCTGCCTTCGATGGGTTCGAAGTGGGTCCAGACACCACAGAGTCTCAACAAGACCAAGCAGAAACAGAAACCTTTGAAAAAGCAGAACAAGAGGAACAGAAAAATGTTTCGGACTCAAACGATGCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATCACTAATTCCCAATTGGCCGAGCTCTTTGGAGAAGCTGGCACCGTCGTGTCTGCTGAAATTGTGTATGATCGTGTCACGGACAGAAGCAGGGGATTTGCATTTGTTACAATGGGGAGTGTTGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGAACTGTTAAGGTAAACTTCCCAGAGGTGCCCAAAGGAGGGGAAATGTTAGTAATGGGGCCAAAAATCAGGAACAACTACAGAGGCTTTGTAGACAGCCCCCACAAGATCTATGCTGGAAACCTTGGCTGGGGACTGACCTCACAGGGTCTTAGAGAAGCTTTTGCCGAGCAGCCAGGCGTGTTGAGTGCCAAGGTCATCTATGAGAGGGACAGTGGAAGATCTCGAGGTTTCGGCTTTGTTTCTTTTGAAACCGCTGAGTCTGCAGCTGCTGCTTTGGACGTTATGAATGGTGTGGAGGTACAAGGTCGGGCCTTGAGGTTGAATTTGGCTGAGGCGAGGACACCTTCATCTCCTCCAGTAATTGAGGAAAATGCTGGAAGCAATGTTGAAAGCTCGGAATTGGTGTCTAGTGCCAGCGCATAA 951 0.4816 MAATVSVSSSVCNRISNLSFTHSSISLTTNFPQRPISQKPLTLNFKPQSLSLSFLPLHRLPPPSAAFDGFEVGPDTTESQQDQAETETFEKAEQEEQKNVSDSNDAGRLYVGNLPYSITNSQLAELFGEAGTVVSAEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMFDGSQVGGRTVKVNFPEVPKGGEMLVMGPKIRNNYRGFVDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAAAALDVMNGVEVQGRALRLNLAEARTPSSPPVIEENAGSNVESSELVSSASA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16648g00002 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Mupr16648g00002 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 282 IPR000504 GO:0003723
Mupr16648g00002 316 Gene3D - 196 295 IPR012677 -
Mupr16648g00002 316 MobiDBLite consensus disorder prediction 84 102 - -
Mupr16648g00002 316 SUPERFAMILY RNA-binding domain, RBD 207 292 IPR035979 GO:0003676
Mupr16648g00002 316 Gene3D - 68 189 IPR012677 -
Mupr16648g00002 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Mupr16648g00002 316 SMART rrm1_1 108 181 IPR000504 GO:0003723
Mupr16648g00002 316 SMART rrm1_1 211 284 IPR000504 GO:0003723
Mupr16648g00002 316 MobiDBLite consensus disorder prediction 296 316 - -
Mupr16648g00002 316 PANTHER OS02G0815200 PROTEIN 38 291 - -
Mupr16648g00002 316 MobiDBLite consensus disorder prediction 67 106 - -
Mupr16648g00002 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Mupr16648g00002 316 CDD RRM1_PSRP2_like 108 187 - -
Mupr16648g00002 316 SUPERFAMILY RNA-binding domain, RBD 104 183 IPR035979 GO:0003676
Mupr16648g00002 316 CDD RRM2_NsCP33_like 211 286 - -
Mupr16648g00002 316 FunFam 33 kDa ribonucleoprotein, chloroplastic 192 296 - -
Mupr16648g00002 316 MobiDBLite consensus disorder prediction 289 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16648g00002 Mupr-Chr16648 7794 10220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16648g00002 94 289 Eukaryotic Initiation Factors Gene Family AT3G16380 31.500 5.55e-22 94.4