Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16648g00001 ATGGGTCACATAGTACTAAAAGGAGGTGGAGGGTCCTTGCTATGCATGAAAACCAAAGCTCATTGGCGTGAAGTTGTTTACTTTACAGCAACAAGATTAACTTTTGAAATCATCTTTTGGAGGGTGTATATGGCGATGCAAAGTGTTTATCTTAAAGAACATGAAGGAAATACACACAGTTCTGTGGGGGCGTTGTCATCTGCAGCGTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCTGTTCATGGAGAGTCTTGTGTCCAAATGAAATCCTTTTCATTGGAGATTCCTAACTGCATAGACCAACTTGCTGCTAGTAAGCCATCGGCAAGAGGACCTGAACAAGTGTTGGCCAAAGGGCATACAACTCACTTTACCATCTTTCCAGATGATTGTAAAATGGTGGATGATGCGCAAAAGCTTCAGACAACCATATCGCTGCACTCACCACTTACTGACTCCCACTCTCGTTTTGAGATAGGCTTTAGTCAGCCCATGATATGTGCAAAGTATCCGTATTCGGACCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCCCATAACATGACATCTGATGACGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATTATTAGGCGTCGCCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTCGCAAGCCCTATATGCATGAGTCACGTCATCGCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGGTTCTTGAACACAAAGAATTCTGTTAATGGAAATGGTAAAAGTGGAAGTGAAGTGCATAAAAGTGTTGGTGAACAATTGCAGTCCAGTGGCTCTCAGAGTTCTGAACTCTTTCAGTCTGAAGTTGGAACTATGAATTCATCAAAGAGCAGTCCAAATATTTCTGGCTCAGAGGTGACTAGCATGTTTTCTCGAGGAGGTCTCGATGGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTCTGGCAGACATGATAGACGGTGGGCGCGGTTTGATCATACCCCCCAAATGGGTTGCAGCAGCAGGTAACTGTTGCAACCTCAAAGTTTGGTGTAGCATTGCACCAAACCCATCATTGATGAGACCAGATGAAGAAGCTTGTTGCACTTGTGTTGACTGTGACAAGTTTCGTACTATAGGCTTCGTCCTCACATCCGCCTATTAA 1221 0.448 MGHIVLKGGGGSLLCMKTKAHWREVVYFTATRLTFEIIFWRVYMAMQSVYLKEHEGNTHSSVGALSSAASAPWWSAFGSQSVHGESCVQMKSFSLEIPNCIDQLAASKPSARGPEQVLAKGHTTHFTIFPDDCKMVDDAQKLQTTISLHSPLTDSHSRFEIGFSQPMICAKYPYSDQFYGLFSAYAPQISGRIMLPHNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRRKPYMHESRHRHAMRRPRGCGGRFLNTKNSVNGNGKSGSEVHKSVGEQLQSSGSQSSELFQSEVGTMNSSKSSPNISGSEVTSMFSRGGLDGFSLNHLGSAVHSLADMIDGGRGLIIPPKWVAAAGNCCNLKVWCSIAPNPSLMRPDEEACCTCVDCDKFRTIGFVLTSAY 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16648g00001 406 MobiDBLite consensus disorder prediction 238 253 - -
Mupr16648g00001 406 PRINTS CCAAT-binding transcription factor subunit B signature 205 227 IPR001289 GO:0003700|GO:0006355
Mupr16648g00001 406 PRINTS CCAAT-binding transcription factor subunit B signature 236 259 IPR001289 GO:0003700|GO:0006355
Mupr16648g00001 406 SMART cbf3 201 262 IPR001289 GO:0003700|GO:0006355
Mupr16648g00001 406 Gene3D - 203 263 - -
Mupr16648g00001 406 ProSiteProfiles NF-YA/HAP2 family profile. 202 262 IPR001289 GO:0003700|GO:0006355
Mupr16648g00001 406 MobiDBLite consensus disorder prediction 260 315 - -
Mupr16648g00001 406 MobiDBLite consensus disorder prediction 238 315 - -
Mupr16648g00001 406 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 205 259 IPR001289 GO:0003700|GO:0006355
Mupr16648g00001 406 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 108 316 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16648g00001 Mupr-Chr16648 1640 6935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16648g00001 13 368 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.175 2.10e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mupr16648g00001 CBFB_NFYA 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16648g00001 K08064 - gmx:100527677 545.814