Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16628g00003 ATGTGGAGTTCAACTTCAAGCACAGCAATTGCAGTACCCTCCTCCGACGAGGAGCCTAGCCTATTCTCCTCCTCCTCTTCCTCCTCTTCCTTCTCCACCTCTTTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACTCGTGGCCTCATGCATCTCTTCCCCGACGACACTCCTACTTCTCTTCCCGTTGGACGGAAGCCTCTCGTCTGTGTTGTCGGCGTGCCTAATCACATGACCTATGCCGATTTCTGCCAGTTCTGTGGTTCATTCATTCAGCACATGCTAGAGATGCGCATTGTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGCTTTGACGATCAAGACTCCACCGACAGCTTCTACAAGCACTACAATGGCCGTCGTTTCTCATCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACATTAGACGTGCAGTACACTGGCTCCATTGAACATGCGCAACCCTCCAATGCCAGTTCAACTGAACAGCCTACGTGTCCTGTTTGCCTTGAGCGATTAGATCAAGACACTAGTGGAATTCTTACAACTATATGTAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTGTATGCCGATATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGCTATGTTGGCTGCGGAAGATACAAGGGAGGACATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTGGAAACCAAACGCGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGGTTGAGCTGAATGCCCACTGTGCACATGCAGACGATGGATGCAGAAGTTGCAGCGGTGAAGATAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAACTGCTTGCTACTCAACTTGAAAACCAAAAATTATATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAATCTGAAAGAAAAATTTCGAAAGCTGTTCAGAAGGCTATTAGTCTTAAACAGCAGAAGATTCAGTCAAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGAGGTTTGGAAAGCAAAGATACTTGAGATTGAAGAGAGGGAGAAAAAAGCTATGAGACTGATGGATGATAGAGCAGGGGACCTGGAAGAGCAGCTTAGAGATCTCATGGTTTGTCTGGAGGGTGGTAAGACGGTAGAACAGCTGCCCGTTTCAGATGAAGGGAGTGTCCTTGACAAATCAAAAGAATCCTCGTCAACTACTACTGGCTCTGAGCTGGTACGCATAACACAAGAATGA 1446 0.4378 MWSSTSSTAIAVPSSDEEPSLFSSSSSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDTPTSLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDDQDSTDSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCAHADDGCRSCSGEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEESERKISKAVQKAISLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEEVWKAKILEIEEREKKAMRLMDDRAGDLEEQLRDLMVCLEGGKTVEQLPVSDEGSVLDKSKESSSTTTGSELVRITQE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16628g00003 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 215 IPR013083 -
Mupr16628g00003 481 MobiDBLite consensus disorder prediction 452 481 - -
Mupr16628g00003 481 ProSiteProfiles Zinc finger RING-type profile. 173 213 IPR001841 -
Mupr16628g00003 481 SMART ring_2 173 212 IPR001841 -
Mupr16628g00003 481 Pfam Zn-finger in ubiquitin-hydrolases and other protein 224 283 IPR001607 GO:0008270
Mupr16628g00003 481 CDD RRM_BRAP2_like 71 152 - -
Mupr16628g00003 481 CDD RING-H2_BRAP2 171 214 IPR047243 -
Mupr16628g00003 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 294 IPR013083 -
Mupr16628g00003 481 MobiDBLite consensus disorder prediction 463 481 - -
Mupr16628g00003 481 Coils Coil 382 402 - -
Mupr16628g00003 481 Pfam BRCA1-associated protein 2 64 160 IPR011422 -
Mupr16628g00003 481 ProSiteProfiles Zinc finger UBP-type profile. 207 300 IPR001607 GO:0008270
Mupr16628g00003 481 SMART Zf_UBP_1 223 272 IPR001607 GO:0008270
Mupr16628g00003 481 SUPERFAMILY RING/U-box 189 288 - -
Mupr16628g00003 481 PANTHER BRCA1-ASSOCIATED PROTEIN 14 469 - -
Mupr16628g00003 481 Coils Coil 338 376 - -
Mupr16628g00003 481 Pfam Ring finger domain 172 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16628g00003 Mupr-Chr16628 8634 11450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16628g00003 169 213 C3H Transcription Factor Family AT1G72220 48.936 1.81e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16628g00003 K10632 - gmx:100794688 850.892