Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mupr16628g00003 | ATGTGGAGTTCAACTTCAAGCACAGCAATTGCAGTACCCTCCTCCGACGAGGAGCCTAGCCTATTCTCCTCCTCCTCTTCCTCCTCTTCCTTCTCCACCTCTTTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACTCGTGGCCTCATGCATCTCTTCCCCGACGACACTCCTACTTCTCTTCCCGTTGGACGGAAGCCTCTCGTCTGTGTTGTCGGCGTGCCTAATCACATGACCTATGCCGATTTCTGCCAGTTCTGTGGTTCATTCATTCAGCACATGCTAGAGATGCGCATTGTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGCTTTGACGATCAAGACTCCACCGACAGCTTCTACAAGCACTACAATGGCCGTCGTTTCTCATCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACATTAGACGTGCAGTACACTGGCTCCATTGAACATGCGCAACCCTCCAATGCCAGTTCAACTGAACAGCCTACGTGTCCTGTTTGCCTTGAGCGATTAGATCAAGACACTAGTGGAATTCTTACAACTATATGTAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTGTATGCCGATATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGCTATGTTGGCTGCGGAAGATACAAGGGAGGACATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTGGAAACCAAACGCGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGGTTGAGCTGAATGCCCACTGTGCACATGCAGACGATGGATGCAGAAGTTGCAGCGGTGAAGATAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAACTGCTTGCTACTCAACTTGAAAACCAAAAATTATATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAATCTGAAAGAAAAATTTCGAAAGCTGTTCAGAAGGCTATTAGTCTTAAACAGCAGAAGATTCAGTCAAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGAGGTTTGGAAAGCAAAGATACTTGAGATTGAAGAGAGGGAGAAAAAAGCTATGAGACTGATGGATGATAGAGCAGGGGACCTGGAAGAGCAGCTTAGAGATCTCATGGTTTGTCTGGAGGGTGGTAAGACGGTAGAACAGCTGCCCGTTTCAGATGAAGGGAGTGTCCTTGACAAATCAAAAGAATCCTCGTCAACTACTACTGGCTCTGAGCTGGTACGCATAACACAAGAATGA | 1446 | 0.4378 | MWSSTSSTAIAVPSSDEEPSLFSSSSSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDTPTSLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDDQDSTDSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCAHADDGCRSCSGEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEESERKISKAVQKAISLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEEVWKAKILEIEEREKKAMRLMDDRAGDLEEQLRDLMVCLEGGKTVEQLPVSDEGSVLDKSKESSSTTTGSELVRITQE | 481 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mupr16628g00003 | 481 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 215 | IPR013083 | - | |
Mupr16628g00003 | 481 | MobiDBLite | consensus disorder prediction | 452 | 481 | - | - | |
Mupr16628g00003 | 481 | ProSiteProfiles | Zinc finger RING-type profile. | 173 | 213 | IPR001841 | - | |
Mupr16628g00003 | 481 | SMART | ring_2 | 173 | 212 | IPR001841 | - | |
Mupr16628g00003 | 481 | Pfam | Zn-finger in ubiquitin-hydrolases and other protein | 224 | 283 | IPR001607 | GO:0008270 | |
Mupr16628g00003 | 481 | CDD | RRM_BRAP2_like | 71 | 152 | - | - | |
Mupr16628g00003 | 481 | CDD | RING-H2_BRAP2 | 171 | 214 | IPR047243 | - | |
Mupr16628g00003 | 481 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 216 | 294 | IPR013083 | - | |
Mupr16628g00003 | 481 | MobiDBLite | consensus disorder prediction | 463 | 481 | - | - | |
Mupr16628g00003 | 481 | Coils | Coil | 382 | 402 | - | - | |
Mupr16628g00003 | 481 | Pfam | BRCA1-associated protein 2 | 64 | 160 | IPR011422 | - | |
Mupr16628g00003 | 481 | ProSiteProfiles | Zinc finger UBP-type profile. | 207 | 300 | IPR001607 | GO:0008270 | |
Mupr16628g00003 | 481 | SMART | Zf_UBP_1 | 223 | 272 | IPR001607 | GO:0008270 | |
Mupr16628g00003 | 481 | SUPERFAMILY | RING/U-box | 189 | 288 | - | - | |
Mupr16628g00003 | 481 | PANTHER | BRCA1-ASSOCIATED PROTEIN | 14 | 469 | - | - | |
Mupr16628g00003 | 481 | Coils | Coil | 338 | 376 | - | - | |
Mupr16628g00003 | 481 | Pfam | Ring finger domain | 172 | 213 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mupr16628g00003 | Mupr-Chr16628 | 8634 | 11450 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mupr16628g00003 | 169 | 213 | C3H Transcription Factor Family | AT1G72220 | 48.936 | 1.81e-07 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mupr16628g00003 | K10632 | - | gmx:100794688 | 850.892 |