Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16625g00001 ATGGGAAGTCCAGAATCCAATTTGCCACCAGGTTTTAGGTTCCACCCAACCGATGAGGAGCTCATTCTTCACTACCTTAGTAAAAAGGTAGCATCCATACCCTTGCCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGCTAGATCCATGGGACTTACCAGCTAAGGCAACGTTTGGGGAGAAAGAATGGTACTTTTTTAGTCCTAGAGACAGAAAGTACCCAAAT 228 0.4386 MGSPESNLPPGFRFHPTDEELILHYLSKKVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPN 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16625g00001 76 Gene3D NAC domain 17 76 IPR036093 GO:0003677|GO:0006355
Mupr16625g00001 76 ProSiteProfiles NAC domain profile. 8 76 IPR003441 GO:0003677|GO:0006355
Mupr16625g00001 76 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 76 - -
Mupr16625g00001 76 Pfam No apical meristem (NAM) protein 9 76 IPR003441 GO:0003677|GO:0006355
Mupr16625g00001 76 SUPERFAMILY NAC domain 4 76 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16625g00001 Mupr-Chr16625 6168 6601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16625g00001 4 76 NAC Transcription Factor Family AT3G04070 86.301 1.06e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mupr16625g00001 NAM 3.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16625g00001 - - gmx:100301906 163.696