Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16617g00002 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAAACCATAACCCTTGAGGTCGAGAGTTCAGATACCATTGATAACGTGAAAGCCAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAGGATGGAAGAACCCTTGCCGATTACAACATTCAGAAGGAATCCACTCTTCATTTGGTGCTTCGTTTGAGAGGTGGCATGCAAATTTTTGTTAAGACCTTGACGGGGAAGACCATAACTTTGGAGGTTGAAAGTTCTGATACGATTGATAATGTGAAGGCTAAGATACAGGACAAGGAGGGCATCCCACCAGACCAGCAGAGGCTTATCTTTGCTGCTCGCAGTCTCTTGATCTTTTTCATTTTCCCTTACAAGATGCAGATCTTCGTGAAAACATTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGTTCAGACACCATTGACAACGTGAAAGCTAAGATCCAAGACAAAGAAGGGATTCCACCTGACCAGCAAAGGCTTATATTTGCAGGCAAACAACTTGAGGATGGACGCACTCTTGCCGATTACAACATCCAGAAGGAATCCACTCTCCACCTTGTGCTTCGTTTGAGAGGTGGCATGCAAATATTTGTGAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTAGAATCCTCGGACACAATTGATAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCACCAGATCAGCAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTTGCCGATTATAATATCCAGAAGGAATCTACTTTGCATTTGGTGTTGCGCCTTCGTGGTGGTATGCAAATATTTGTCAAAACTCTCACTGGAAAAACCATTACCTTGGAGGTGGAAAGCTCTGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCGGATCAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAATCCACCCTGCACCTTGTCCTTCGCCTTCGCGGTGGCAAT 1092 0.4524 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAARSLLIFFIFPYKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16617g00002 364 ProSitePatterns Ubiquitin domain signature. 162 187 IPR019954 -
Mupr16617g00002 364 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Mupr16617g00002 364 CDD Ubl_ubiquitin 212 287 - -
Mupr16617g00002 364 FunFam Polyubiquitin 3 288 363 - -
Mupr16617g00002 364 SUPERFAMILY Ubiquitin-like 76 126 IPR029071 -
Mupr16617g00002 364 ProSiteProfiles Ubiquitin domain profile. 77 126 IPR000626 GO:0005515
Mupr16617g00002 364 Pfam Ubiquitin family 214 285 IPR000626 GO:0005515
Mupr16617g00002 364 Pfam Ubiquitin family 79 125 IPR000626 GO:0005515
Mupr16617g00002 364 Pfam Ubiquitin family 138 209 IPR000626 GO:0005515
Mupr16617g00002 364 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Mupr16617g00002 364 Pfam Ubiquitin family 290 361 IPR000626 GO:0005515
Mupr16617g00002 364 ProSitePatterns Ubiquitin domain signature. 314 339 IPR019954 -
Mupr16617g00002 364 CDD Ubl_ubiquitin 1 76 - -
Mupr16617g00002 364 Gene3D - 77 126 - -
Mupr16617g00002 364 SUPERFAMILY Ubiquitin-like 210 287 IPR029071 -
Mupr16617g00002 364 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mupr16617g00002 364 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mupr16617g00002 364 SMART ubq_7 136 207 IPR000626 GO:0005515
Mupr16617g00002 364 SMART ubq_7 1 72 IPR000626 GO:0005515
Mupr16617g00002 364 SMART ubq_7 212 283 IPR000626 GO:0005515
Mupr16617g00002 364 SMART ubq_7 77 132 IPR000626 GO:0005515
Mupr16617g00002 364 SMART ubq_7 288 359 IPR000626 GO:0005515
Mupr16617g00002 364 CDD Ubl_ubiquitin 136 211 - -
Mupr16617g00002 364 PANTHER UBIQUITIN 77 126 - -
Mupr16617g00002 364 SUPERFAMILY Ubiquitin-like 131 211 IPR029071 -
Mupr16617g00002 364 SUPERFAMILY Ubiquitin-like 287 363 IPR029071 -
Mupr16617g00002 364 CDD Ubl_ubiquitin 288 363 - -
Mupr16617g00002 364 PRINTS Ubiquitin signature 53 74 IPR019956 -
Mupr16617g00002 364 PRINTS Ubiquitin signature 11 31 IPR019956 -
Mupr16617g00002 364 PRINTS Ubiquitin signature 32 52 IPR019956 -
Mupr16617g00002 364 ProSitePatterns Ubiquitin domain signature. 238 263 IPR019954 -
Mupr16617g00002 364 FunFam Polyubiquitin-C 77 127 - -
Mupr16617g00002 364 FunFam Polyubiquitin 3 1 76 - -
Mupr16617g00002 364 FunFam Polyubiquitin 3 136 211 - -
Mupr16617g00002 364 Gene3D - 212 287 - -
Mupr16617g00002 364 Gene3D - 288 364 - -
Mupr16617g00002 364 Gene3D - 1 76 - -
Mupr16617g00002 364 Gene3D - 133 211 - -
Mupr16617g00002 364 ProSiteProfiles Ubiquitin domain profile. 136 211 IPR000626 GO:0005515
Mupr16617g00002 364 FunFam Polyubiquitin 3 212 287 - -
Mupr16617g00002 364 ProSiteProfiles Ubiquitin domain profile. 288 363 IPR000626 GO:0005515
Mupr16617g00002 364 ProSiteProfiles Ubiquitin domain profile. 212 287 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16617g00002 Mupr-Chr16617 5255 11295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16617g00002 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 6.71e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16617g00002 K08770 - cave:132161667 666.381