Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16603g00001 GAAAATGGATCAGAGGGTTTGTCACGGGACACACTTCATTATGTTAGGGAGCTTGTGCAGAATGGCAATGCCGCATTTCGGGAGAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCTAATAATGTCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGCGCAGCTTATATTAGGATTAGCCAATATTTTATGCACAGAACCCCATCATCTTCAGAGCGTAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAAATCCAAAGTAATTCAGAAAAATCATATATTTTAAAGGCCAATGCTCTTCTCCTGTTAGAGAAATATGAGAATGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGTGCGTCTCTTCAAAATTTGGAAAGAGTGTCATCTAGTTCAACAGGGATGAGTACACATGGACAACCAGAGCGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTGACAACCCCTTGTGGACATTCTTTTTGCCGTTCATGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACTTGTTCCATTAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGCATGCGGGTTTAATCAACGTTGGTGTAGATTTGCTCCCTCTTTTTGTCATGGATGTTGTCATACCATGCCAAAGGTTTCCACTCAATATATTTGAACCTCGTTATAGACTCATGGTGAGTTGGTCAATGGAT 867 0.4141 ENGSEGLSRDTLHYVRELVQNGNAAFRENRMEEAINFYSRANNVKSGDPIILSNRSAAYIRISQYFMHRTPSSSERRPLSGLDPTTLAELGLKDAEKLVEIQSNSEKSYILKANALLLLEKYENARDVILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEHAGLINVGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVSWSMD 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16603g00001 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 250 IPR013083 -
Mupr16603g00001 289 Gene3D Tetratricopeptide repeat domain 6 155 IPR011990 GO:0005515
Mupr16603g00001 289 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Mupr16603g00001 289 SMART ring_2 173 210 IPR001841 -
Mupr16603g00001 289 SUPERFAMILY PUA domain-like 257 288 IPR015947 -
Mupr16603g00001 289 Pfam Zinc finger, C3HC4 type (RING finger) 173 210 - -
Mupr16603g00001 289 SUPERFAMILY TPR-like 15 144 IPR011990 GO:0005515
Mupr16603g00001 289 PANTHER RING FINGER PROTEIN 127 15 288 - -
Mupr16603g00001 289 SUPERFAMILY RING/U-box 168 236 - -
Mupr16603g00001 289 ProSitePatterns Zinc finger RING-type signature. 188 197 IPR017907 -
Mupr16603g00001 289 Gene3D - 255 289 IPR046336 -
Mupr16603g00001 289 CDD RING-HC_LONFs_rpt2 170 214 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16603g00001 171 243 C3H Transcription Factor Family AT2G42030 34.667 7.99e-09 54.3