LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr1656g00004	GACCAGAAGAAAACCCAAGCTAATAAATCGAAGAAGGTTCCAACGGCAGATTCTTTTAATTCTAAACCCAAGAGACTATCATCTTTGTTTTCTTCCTCATCTTCTGCTCACGACTTGAGGCATTTGGAATTGGAGAAAGAGAAAGAAGATATAACATCACCAAGAGGTGTCTTAGAAGCCTGCATGAAAGACGGTGACTCTCTGCAGCCACCTGTACCGGAAATCACTTGTTCAACCTCGAGGCCACACTCTCACTGGACCAAATTTTTCAAACTTTTGAAAAGAAAATCTTCTAAGCGCCTAGGGTCCCTCCCTTCTCTTAGTGTGCCAAAGATACCAAAGTGGAAAAGCAAAAGCAGTAGAGAAAACCAAGTTCTGAGTAGCCTATGCAACTTGAGGTCTTCTTTGGTGACTTTCAGCCTCTCTAACCTCAGAAATGCAACCAACAATTTTAGCAATGAAAATATAATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAGGGGTGTCTGCAAGGTGGGCAATTAATAGCCGTGAAGAAATTGACTACAGGGACCGCAGAGGAAAAAACCGCAGGCTTTCTATCTGAGCTAGGCATAATTGCTCATGTTGACCATGCTAATACTGCTAAGCTAGTTGGATGTTGTATAGAAGGAGAAATGCACCTTGTCTTCGAACTATCTCCACTGGGAAGTTTAGGATCTCTTCTTCATGGTCCAGATAAAAGCAAATTAGATTGGAGTAAAAGGTATAAAATTGCTCAAGGAATAGCTGATGGTCTCCTCTATCTACATGAGAGTTGTCACAGACGAATCATTCATAGAGATATTAAGTCAGAGAATATTCTTCTCACGGAGAATTTTGTGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATTGACTCACCATAATGTATCAAAATTTGAAGGGACATTTGGCTATTTTGCTCCTGAATATTTCATGCATGGCATAGTAGATGAGAAAACTGATGTTTATTCATTTGGAGTCCTACTTTTGGAGATCATAACTGGTCGTCCAGCTGTGAATCATTTGCAACAGAGTGTTGTGACATGGGCAAAACCTTTGCTTGATATTAAATATATCAAGGACCTCGTTGATCCTTCTCTTGGCAATAATTATGATAAAGAACAGCTGGGTTGTGTTGTAACATTGCTAAGAGGTGATGAATATGTTCTGGAATCCACAAAAGCAAGCCGAAGGAAGCCTCTCCAAAGAACATTCTCAGAAGAGCTACTGGACGCGCAAGAATACAACTCAACAAAATATTTAGGAGATCTCATGCGACATAAGCAGAATCAGAGCAAGGACAACGGTCGCAACAAGAGCAATGGATTCGTTCCTTCTTCCTTCAAGTTCATTTCGTCTTGCATTAAGACCGCCTCCTCCGGCGTCCGTTCTGCCGGCGCCTCCGTCGCCGCCTCCATCTCCGGCGACGGACACGACGGCAAGGACCAGGTAGCATTTTGCGTGAGTGCTACTCTTCCAGAGTTGTCAGTGCTTTGGGCTTGCTTTGATAGGCTAGAACTCAATCCGTCTTCTTTCAAGCATGTCCTCTTACTCGGTTATTCCAATGGCTTTCAAGTTCTTGATGTGGAAGATGCCTCTAATGTCAGGGAACTTGTCTCAAAACGTGATGATCCAGTTTCATTTTTACAGATGCAGCCTGTCCCTGCAAAATCAGAAGGCTGTGAAGGATTTAAAGCATCACATCCTTTACTTTTGGTTGTTGCATGTGATAAATCAAAGATTCCTGGTAAAATGCTAAATGTCAGAGATGGCCATAATGAAGCTCAAGTGGAAAATATTGTTAGCTCAGCTACAGCAGTTCGGTTTTACTCACTAAGGTCCCATACCTATGTTCATGCTCTGAGATTCCGTTCAACTGTCTACATGGTTAGATGCAGTCCTCGAATTGTGGCTGTCGGTCTTGCTACTCAAATATATTGTTTTGATGCTCTTACTCTTGAGAATAAGTTCAGTGTTCTCACGTACCCTGTACCTCAATTGGGAGGACAAGGAATGATTGGGGTTAATATTGGCTATGGTCCTATGGCTGTAGGGCCCCGGTGGTTAGCTTATGCCTCAAACAGCCCACTGTTGTCAAATGCAGGCCGCTTGAGTCCTCAGAGTCTTACTCCTCCTTCTGTCAGCCCATCAACATCTCCCAGCAGTGGAAGCCTGGTAGCCCGATATGCCATGGAATCTAGCAAGCATTTGGCTGCTGGGCTGATCAATCTTAGTGATATTGGATACAAAACACTGTCTAAATACTATCAAGATCTAATACCTGATGGATCCAGTTCTCCTGTATCATCAAACTCCAGTTGGAAAGTTAGTCGATTTACATCAAATTCTACAGAAACAGATACGGCTGGGATGGTTGTTGTCAGGGATTTTGTTTCTAGAGCTGTTGTGGCACAATTTAGGGCCCATACCAGTCCAATATCTGCATTATGTTTTGACCCAAGCGGGACACTTTTAGTTACAGCCTCAATTCATGGCAACAACATTAATATATTTCGAATTATGCCATCCTGCTCAAGGAATGGATCAGGTTCTCAAAGCAATGATTGGAGCTGTTCACATGTGCACCTTTTCAAGCTCCACCGTGGCATGACATCTGCTGTAATACAAGATATTTGTTTTAGCCATTACAGTCAGTGGGTTGCCATCATTTCCTCCAAGGGAACTTGTCATATTTTTGTTCTTGCCCCTTTTGGTGGTGAGACAGTTCTTAAAATGCACAATCAGGACACAGATGGGCCTGCTCTTTTGCCAATTTTCCCTCTACCATGGTGGTTCACTCCACGTTTCACAGTAAACCAGCAGCAGTTATGCCTGGCACCTCCACCTCCTGTTGTTCTTTCTGTGGTTAGCAGAATAAAAAATAGTAATGCTGGATGGCTCAATACGGTTAGTAATGCTGCATCTTCTGCAGCAGGGAAAGTCTCAATTCCATCTGGTGCTGTTTCTGCTGTCTTTCACAGTTCCATTCCTCATGATTCACACAACACGCACTCAAAAATTCATGCTATGGAGCACTTATTAGTTTATACCCCTTCTGGTCATTTAATTCAATATAAACTACTGCCATCATTGGTGGTAGAGTCAAGTGAAACTACTTCAAGAACAGCCCCAGTTCCTTCAGCACAGATACAAGAAGAAGATCTGCGTGTGAAGGTTGAACCAGTTCAATGGTGGGATGCCTGTAGGAGATATGATTGGCCAGAAAAAGAGGTGTGCATATTGGGGAATACTGTTGGTGGACTGGAAGCTGCAGAAATGATCTTGGATTATGAAGATAATAGCACCGGGAACAGTAATTCTTTAAAACTTAATAAGCAATGCCACTTCTCAAATACAGAGGTACATATAAGCTCTGGGCGGATACCAATTTGGCAGGAATCTAAGGTGTCTTTCTTTGTGATGAGTCCTTTGGAAGCTGGAGAGCTGAATTTATGTGAACTTAGTACAAGTGGAGAAATTGAAATAGAGAATTTTCCTGTTAATGAGATTGAAATAAAACAGAAGGATCTGTTGCCCATCTTTGACCATTTCCATAGAATTCAGTCTACTTGGGGTGACAGAGGTATTTTTATGGGAAGATGTTCTAGCTCTTCATCTGATTCACATGGAACTGAAGAGAAGTTGCCAGAAGATGCTGCAATTTCCCATTCAAAGTTTATGGTACCTGGCTTAGCTGAAAAGGCATATGTTGGTGCCTCAAATATTGCTGATATTATAACTGCAAAGGCTAAATCGTCAAAACATGAAAAAGGCAGTGACAGTTTCAACTCAACTTTTAGTGGTTGTGATTTGAATATGAATGTTACTTGTGAGGAGTCAATACGTGTCTCACCAGACTTTGAGCAATTTTTTCAAGAAGGTTATTGTAAAGCATCAGTTGACTGTCATGAATCAACAGAAGTTATTACTGATGTGGATTGTAGCAGTCCCTGTGGCAGGGAGAAATCTGATGAAGATGGTGATAATGATGACATGCTTGGTGATGTATTTGACTTCTCTGAGGAAGGTATGAACTTCAAAATAACGCTATTTCCTGTTACATTCTTGCCTCCT	4113	0.4194	DQKKTQANKSKKVPTADSFNSKPKRLSSLFSSSSSAHDLRHLELEKEKEDITSPRGVLEACMKDGDSLQPPVPEITCSTSRPHSHWTKFFKLLKRKSSKRLGSLPSLSVPKIPKWKSKSSRENQVLSSLCNLRSSLVTFSLSNLRNATNNFSNENIIGRGGFAEVYKGCLQGGQLIAVKKLTTGTAEEKTAGFLSELGIIAHVDHANTAKLVGCCIEGEMHLVFELSPLGSLGSLLHGPDKSKLDWSKRYKIAQGIADGLLYLHESCHRRIIHRDIKSENILLTENFVPQICDFGLAKWLPEQLTHHNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIITGRPAVNHLQQSVVTWAKPLLDIKYIKDLVDPSLGNNYDKEQLGCVVTLLRGDEYVLESTKASRRKPLQRTFSEELLDAQEYNSTKYLGDLMRHKQNQSKDNGRNKSNGFVPSSFKFISSCIKTASSGVRSAGASVAASISGDGHDGKDQVAFCVSATLPELSVLWACFDRLELNPSSFKHVLLLGYSNGFQVLDVEDASNVRELVSKRDDPVSFLQMQPVPAKSEGCEGFKASHPLLLVVACDKSKIPGKMLNVRDGHNEAQVENIVSSATAVRFYSLRSHTYVHALRFRSTVYMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGMIGVNIGYGPMAVGPRWLAYASNSPLLSNAGRLSPQSLTPPSVSPSTSPSSGSLVARYAMESSKHLAAGLINLSDIGYKTLSKYYQDLIPDGSSSPVSSNSSWKVSRFTSNSTETDTAGMVVVRDFVSRAVVAQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSCSRNGSGSQSNDWSCSHVHLFKLHRGMTSAVIQDICFSHYSQWVAIISSKGTCHIFVLAPFGGETVLKMHNQDTDGPALLPIFPLPWWFTPRFTVNQQQLCLAPPPPVVLSVVSRIKNSNAGWLNTVSNAASSAAGKVSIPSGAVSAVFHSSIPHDSHNTHSKIHAMEHLLVYTPSGHLIQYKLLPSLVVESSETTSRTAPVPSAQIQEEDLRVKVEPVQWWDACRRYDWPEKEVCILGNTVGGLEAAEMILDYEDNSTGNSNSLKLNKQCHFSNTEVHISSGRIPIWQESKVSFFVMSPLEAGELNLCELSTSGEIEIENFPVNEIEIKQKDLLPIFDHFHRIQSTWGDRGIFMGRCSSSSSDSHGTEEKLPEDAAISHSKFMVPGLAEKAYVGASNIADIITAKAKSSKHEKGSDSFNSTFSGCDLNMNVTCEESIRVSPDFEQFFQEGYCKASVDCHESTEVITDVDCSSPCGREKSDEDGDNDDMLGDVFDFSEEGMNFKITLFPVTFLPP	1371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr1656g00004	1371	Gene3D	Transferase(Phosphotransferase) domain 1	228	441	-	-
	Mupr1656g00004	1371	FunFam	Autophagy-related protein 18h	482	930	-	-
	Mupr1656g00004	1371	PANTHER	BREAST CARCINOMA AMPLIFIED SEQUENCE 3	446	1339	IPR045142	GO:0006914
	Mupr1656g00004	1371	ProSitePatterns	Protein kinases ATP-binding region signature.	157	180	IPR017441	GO:0005524
	Mupr1656g00004	1371	SUPERFAMILY	Protein kinase-like (PK-like)	132	365	IPR011009	-
	Mupr1656g00004	1371	Pfam	Breast carcinoma amplified sequence 3	961	1192	IPR022175	-
	Mupr1656g00004	1371	SMART	serkin_6	151	434	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr1656g00004	1371	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	228	417	-	-
	Mupr1656g00004	1371	SMART	WD40_4	870	913	IPR001680	GO:0005515
	Mupr1656g00004	1371	SMART	WD40_4	812	852	IPR001680	GO:0005515
	Mupr1656g00004	1371	ProSiteProfiles	Protein kinase domain profile.	151	429	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr1656g00004	1371	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK1	127	226	-	-
	Mupr1656g00004	1371	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	271	283	IPR008271	GO:0004672\|GO:0006468
	Mupr1656g00004	1371	Pfam	Protein tyrosine and serine/threonine kinase	154	358	IPR001245	GO:0004672\|GO:0006468
	Mupr1656g00004	1371	MobiDBLite	consensus disorder prediction	1	37	-	-
	Mupr1656g00004	1371	Gene3D	Phosphorylase Kinase; domain 1	112	225	-	-
	Mupr1656g00004	1371	Gene3D	-	509	937	IPR015943	GO:0005515
	Mupr1656g00004	1371	MobiDBLite	consensus disorder prediction	11	37	-	-
	Mupr1656g00004	1371	SUPERFAMILY	WD40 repeat-like	527	912	IPR036322	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr1656g00004	Mupr-Chr1656	23666	38142	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr1656g00004	115	395	Receptor kinase-like Gene Family	AT1G53420	42.268	9.53e-61	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Mupr1656g00004		BCAS3	8.3e-70	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr1656g00004	-		-	cam:101512181	2019.59