Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16561g00001 ATGCCTATTACCAACACTTCTCCAACTATGACCAACTGGTTTTCTGGAATGATAGAAACAGAAACAAGGTGTAAGCAACTTTTTTCTTCGCTCGTTGGGGTGTTCATGAAAGCTATGGAGAGAGTTCTTTTTGCTCTGTTCACTTGCATTCTGGCACTAGGAGGGTCAATAGTAGGAACAATTGCAGGAGGCATCAAAGGGCAGACCATGGAAGCTGGTTTTCTTGATGGGGCTGGCAAAGGAGCAATTACAGGAGCCATTGCAGCATTGGAATTGATAAATTTTGATGCTGTTGATGAGCCAATATCCAAGGTTGCTCTGTTGAGAAGTTTATTAAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTTACACAACTCTATCAGTTGCATGTAACTATTAACACACTGGAAAGTATTTACCAAGAAGTATCAGACATTTATGATATCAGGGGAGTCAGAGGGATACCCCAGAATGTAATTATGAAGCTTCCTTTTCAGCCATTCAACTCTACCAAAATGTTGAAATTATACAACATGTCTTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTGGTCAGGATACTTCCCAAATGTGGGCACCTTTTTCATTTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCATGCCCAATGTGCAGGACTTATGTTCCTGACCACATTCGTAAATTATATAAGTAA 717 0.4031 MPITNTSPTMTNWFSGMIETETRCKQLFSSLVGVFMKAMERVLFALFTCILALGGSIVGTIAGGIKGQTMEAGFLDGAGKGAITGAIAALELINFDAVDEPISKVALLRSLLNGKVFMEWICPAVTQLYQLHVTINTLESIYQEVSDIYDIRGVRGIPQNVIMKLPFQPFNSTKMLKLYNMSCCSICFQDFEDGELVRILPKCGHLFHLECIDKWLVQQGSCPMCRTYVPDHIRKLYK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16561g00001 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 232 IPR013083 -
Mupr16561g00001 238 SUPERFAMILY RING/U-box 183 231 - -
Mupr16561g00001 238 Pfam Ring finger domain 184 226 IPR001841 -
Mupr16561g00001 238 CDD RING-H2_EL5-like 183 226 - -
Mupr16561g00001 238 ProSiteProfiles Zinc finger RING-type profile. 184 226 IPR001841 -
Mupr16561g00001 238 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 20 227 IPR044523 -
Mupr16561g00001 238 SMART ring_2 184 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16561g00001 Mupr-Chr16561 8935 11215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16561g00001 45 229 C3H Transcription Factor Family AT5G66070 36.082 1.44e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16561g00001 - K19041 gmx:100305612 394.815