LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr16560g00001	ATGCCTTTTCAAATCATGGATCAGAGGGGTGTTTCAGCTTCATCCCATTTTTTTGATGACATTTCCTTTTGTTCTGAGAGGAATGTTGGATTACGAAAGCTAAAATCCATTAATGACCATTATCCACAAGGAAGCAATGGAATGGTAGCATCACCTGGCAGCATTTTGAACACTACACCCCCCCTTGATGTAAATGCAAAAGCTGGCTTGCTGATGTCGCAGGCTAGTGTATCTGGGGATAATATAGATTCCAAGGAATCATCACGTTATTGTCCCAAATCATTATCTGATGGATGTCTGCAGTCAGCGCCTACCTCATATGGTTTAATTGGGAGCAAGATTGTGACCAATGCTGCTCCTTGTGAAAGTAGTTTATTCTCAAGCTCCATGTCTGAGATATTTAGCCGAAAGTTATTCGGGAATGACGTTCTGTCTGATCAGCCCATTACTGCTGGTTCTCCTCCCGAGGAAGAACCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGGAATCTGCTTCCTGATGAAGATGATCTGTTTTCGGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAGAACAAGTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATGAATGGTCTCAATGGCGATTATGGTTTTTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGGAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTGTTTGAGCAATATGGAGATATTCGAGCCATTTATACAGCCTGTAAGCATCGTGGTTTTGTTATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCGAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCACTTCCAAAGGTCAATGCTCCGGAAAAGGATATTGGCCATGGTACATTGATGCTATCTGGTCTTGATTCATCCGTTTTAAATGATGACCTTAAACAAATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCGGAAGCTGCTCTTCGTGCATTGAACAAAATTGACATTTCTGGGAAGCAGATCAAGCTCGAACCTGGCCATCCTAGTTTGGTGCACCCGTCTCAAAAGGGGAAAGATGAGCGAGATCTTGGTCAAAGTATTATTGATAACTTATCATTAAGACAAAAGGCAACAGTGTCTTCTGGAGTTATTGGATCTGGCTGCTTGGAAAATGGATATAATCAGAGATTTCAATCTACAGTGCGGCAACCTTTGAATTCATTCATTCATTTGAATTCTGGCCTTCACAACACTGTGAGAGGGGCATCTAGTTCGAGATTTCATCCTCATTCCTTACCCGAGTATCGTGATAGTTTAGCTAGTGGTAGTCCTTATAATTTCTCTAGCACCATTAGCAACATGGCTAACAATATAGGTCCTGGAGCAACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACCTGGCAGAATTTAATGCGGGAGGAAATGGGATACGCCCACAACATGGACTTTATCAAATGTGGAACAGCTCCAATTTGCAACAGCAGCCTTCATCAAGTTCCATGCTTTGGCAGAAAACGCCATCATTTGTTAATGATGCTTGTTCTCCAGGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAACACCAATGATTGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCAAAATTCTTACTTGGGAGCATCCCCTGAGGCTTCTGGTTTTCGTTTGGGTTCTCTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCCCTGGCTTCTCACAATGTGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACGTCCAATGCTGGACAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGTGAGACATCCTATGTCTTCAATGTCAAAATTTGATACTACCAATGAACGAATGAGAAACCTTTATCACCGTAGAAATGAAGCAAGCACCAACAATGTTGATAAAAAACAATATGAACTCGACTTAGGTCGCATATTGCACGGAGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTAAGGGAACTTATGATTTTCTGTATTTGCCCATTGATTTCAAGAACAAATGCAATGTTGGTTATGCATTCATAAACATGATTGATCCTGGTCAAATTGTTCCTTTCCACCAGGCTTTTGATGGGAAAAAATGGGACAAGTTTAATAGTGAAAAAGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAAGCTTCTCTTATTGCTCATTTCCAGAATTCAAGCCTAATGAATGAAGATAAACGATGCCGTCCTATTCTCTTTCATACAGATGGTCCAAATGCTGGTGATCCGGAGCCTTTCCCAATGGGAGCCAACATTAGACTGAGGCCTGGAAAATCGCGCACTGGTGGCAGCGATGAGAGTCGAGGCCAAGGGAGTCCTTCAACTATGGCAAGTGGAGAAGAGTCTGCTAATGGGATAGACTCTTGA	2745	0.4164	MPFQIMDQRGVSASSHFFDDISFCSERNVGLRKLKSINDHYPQGSNGMVASPGSILNTTPPLDVNAKAGLLMSQASVSGDNIDSKESSRYCPKSLSDGCLQSAPTSYGLIGSKIVTNAAPCESSLFSSSMSEIFSRKLFGNDVLSDQPITAGSPPEEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHARTSDDFEDFDLFSSGGGMEMEGDEHLSSGKRMNGLNGDYGFFGGSKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGDIRAIYTACKHRGFVMISYHDLRAAQNAMQALRNRPLRSRKLDIHYSLPKVNAPEKDIGHGTLMLSGLDSSVLNDDLKQIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAEAALRALNKIDISGKQIKLEPGHPSLVHPSQKGKDERDLGQSIIDNLSLRQKATVSSGVIGSGCLENGYNQRFQSTVRQPLNSFIHLNSGLHNTVRGASSSRFHPHSLPEYRDSLASGSPYNFSSTISNMANNIGPGATEASDGRHIQGMGSTGNLAEFNAGGNGIRPQHGLYQMWNSSNLQQQPSSSSMLWQKTPSFVNDACSPGLPQMSSFARTPPHMLRTPMIDHHVGSAPVVTASPWERQNSYLGASPEASGFRLGSLGSGGFHGSWQLHPLASHNVFSHVGGNGTELTSNAGQNSPKQLSHVFPVRHPMSSMSKFDTTNERMRNLYHRRNEASTNNVDKKQYELDLGRILHGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIVPFHQAFDGKKWDKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKSRTGGSDESRGQGSPSTMASGEESANGIDS	914

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr16560g00001	914	Pfam	RNA recognition motif 2	747	843	IPR007201	-
	Mupr16560g00001	914	Gene3D	-	246	335	IPR012677	-
	Mupr16560g00001	914	Gene3D	-	336	430	IPR012677	-
	Mupr16560g00001	914	CDD	RRM1_MEI2_like	251	326	IPR034453	-
	Mupr16560g00001	914	FunFam	MEI2-like protein 5 isoform 2	241	335	-	-
	Mupr16560g00001	914	MobiDBLite	consensus disorder prediction	859	914	-	-
	Mupr16560g00001	914	FunFam	Protein MEI2-like 1	336	427	-	-
	Mupr16560g00001	914	CDD	RRM3_MEI2_like	750	835	IPR034454	-
	Mupr16560g00001	914	SUPERFAMILY	RNA-binding domain, RBD	749	834	IPR035979	GO:0003676
	Mupr16560g00001	914	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	96	910	-	-
	Mupr16560g00001	914	SMART	rrm1_1	338	406	IPR000504	GO:0003723
	Mupr16560g00001	914	SMART	rrm1_1	253	321	IPR000504	GO:0003723
	Mupr16560g00001	914	SMART	rrm1_1	749	825	IPR000504	GO:0003723
	Mupr16560g00001	914	MobiDBLite	consensus disorder prediction	889	914	-	-
	Mupr16560g00001	914	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	252	325	IPR000504	GO:0003723
	Mupr16560g00001	914	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	337	410	IPR000504	GO:0003723
	Mupr16560g00001	914	SUPERFAMILY	RNA-binding domain, RBD	249	407	IPR035979	GO:0003676
	Mupr16560g00001	914	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	339	404	IPR000504	GO:0003723
	Mupr16560g00001	914	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	254	318	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr16560g00001	Mupr-Chr16560	4726	11234	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr16560g00001	247	403	Eukaryotic Initiation Factors Gene Family	AT3G16380	26.404	1.96e-08	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr16560g00001	-		-	gmx:100797893	1628.22