Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16555g00002 ATGGCGAGCAAACACAGAAAACTCTTCCCCGACGAAACAGCTACAAACCAAACCCAAGATTGTTATGGCTTTTGCGACCCCGCGTGTCCTTACAACTGTTACACTAACCCTGACTACTACTTCTCTCCACCACCACCACAATCTATTTCACACTCCAACCAAGTTAACCACATATCCTCCTACATAATCATCCTCGTTACTCTATTCACGGTCATTTTTGTCGTGGTTGGTTTCTACGTGATCAAGGCGAAGTGCTACGCTGCATGGTGCGGGTGGAGGTTCAACGGATCCGTTCCCTCAGACACCACCGAGGAGTTTCTCAATGAGAACCAAGTTGACCACCCCGTGTGGCTCATCGCCACGGTGGGGTTGCAACAATCGATCATAAACTCCATTACGGTGTGCAAGTACAAGAAGGATGAAGGATTGGTTGAAGGAACCGAGTGTTCCGTCTGTTTGAACGAGTTCCAAGAGGAAGAGACATTGAGACTCTTGCCCAAGTGTAACCACGCCTTTCACATTCCTTGTATTGACACGTGGTTGAGATCGCACACCAATTGTCCCCTTTGTCGTGCCGGTATTGTGTCTAATGGTGTTAGTGTCCCTCCTGAAGTAGCTTTGTCTAATTTGGGTTCAATCGAGCAGGAAAATGCAAATTTGGGGAGAAATCAAGTGACCCTTTTGGAGAATTCTCGGAATGAAGGTGGGTTAAGCACCAACATGGTAACAGGGGAATCAAGTGAAGCGCTAGAGTTGATTGATGAATCGAATTCTAAGGAGCGGGTGAATGATCATACTCAGAACCATGAGGTTCTAAATATTGAGAATCAAACAGAGATCAGGGAGTCAATTGATCGAGGTCCCATACCCACAAGTGATATGACCAAAATAGTATATATAAGTAAAGAGCAATACCCACCTTGTCATGAAGTAACTTCTGGGGATGAGTTTCGCTCTTACCTAAAGTCTAAGATGGAGTCTGTTTCAACTGATCCTTCATTGGCTGTGAGTTCTTGTTCTTTAGAATCTGAAAACCATCATGTTGTTGATGATCATAAACATGATAACACAATGGCGCATACGGATGGTGATTGCTACTCAAAAGCGTGTACAACAATTCGTCGTTCCTCCTTTGAAGAGTGTCTGCATCTAAGTCCGTTTTACCAAGTGCGGGGGCATGTGAAGATAAATGTGCTGTATGTTTCTATCACCAAAGACAATGTCCTGTCGCACTGCAGAACAGGTTTGCTCCGACAAGAGGGAATTAGATCAAGTGCAGAATATGAAGCAACAAAAGTTTGA 1302 0.4455 MASKHRKLFPDETATNQTQDCYGFCDPACPYNCYTNPDYYFSPPPPQSISHSNQVNHISSYIIILVTLFTVIFVVVGFYVIKAKCYAAWCGWRFNGSVPSDTTEEFLNENQVDHPVWLIATVGLQQSIINSITVCKYKKDEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNGVSVPPEVALSNLGSIEQENANLGRNQVTLLENSRNEGGLSTNMVTGESSEALELIDESNSKERVNDHTQNHEVLNIENQTEIRESIDRGPIPTSDMTKIVYISKEQYPPCHEVTSGDEFRSYLKSKMESVSTDPSLAVSSCSLESENHHVVDDHKHDNTMAHTDGDCYSKACTTIRRSSFEECLHLSPFYQVRGHVKINVLYVSITKDNVLSHCRTGLLRQEGIRSSAEYEATKV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16555g00002 433 PANTHER RING-H2 FINGER PROTEIN ATL16 45 348 IPR044600 GO:0016567|GO:0016740
Mupr16555g00002 433 Pfam Ring finger domain 148 191 IPR001841 -
Mupr16555g00002 433 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Mupr16555g00002 433 FunFam RING-H2 finger protein ATL54 124 197 - -
Mupr16555g00002 433 SMART ring_2 149 190 IPR001841 -
Mupr16555g00002 433 SUPERFAMILY RING/U-box 139 197 - -
Mupr16555g00002 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 198 IPR013083 -
Mupr16555g00002 433 CDD RING-H2_EL5-like 148 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16555g00002 Mupr-Chr16555 24306 26314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16555g00002 4 202 C3H Transcription Factor Family AT1G72220 48.707 2.18e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16555g00002 - - gmx:100813311 501.901