Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16538g00002 ATGTCTTCCCTTTGGTGTTACGGGTGCAACAAATTTGTCAGAGCATGGAGACAGGAAATGCCGGTATGTCCCGATTGCAACAGCGGATTCGTCGAAGAGGTCGAACATTCCAACCGCTCCGTCCAAGTGGAGGCTCGCCGCCATCGGTTCCCGACGGCGGCGGCCATGTACATGATCGGCCACCGTCCCGGTAATTCCGACCATAACTCCCGCTCCTCCCGCCGTCAGCATTGCCATGCCGCCGCCGCCGTAGAGCCCTTGCCGCTCAATCCGGTTATCATGCTCCGCGGCGAGGGTACGAGCCGCGAACGCCGCTCCGGCTCCGACTCCGGCTTCGACCTTTTCTTTGACGACGGCGCCGGTTCTGGCCTCCGACCGCTTCCCCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGCTTTGACCGCGTCATGGAGCAACTCTCCCACGTGGAGTCTAACAACGGCGGTGCGAGACACAACCATAGGCACACGCCGGCGGCTAAATCCGTCGTGGAGTCGTTGCCGGAGGTGGAGATCAACGCGGGGCACATGGCGATGGAGTCGCACTGCGCGGTCTGCAAAGAGGCTTTTGAACTCTACGCCAAGGCAAAGGAAATGCCGTGTAAGCACATATACCATTCCGAGTGTATCTTACCGTGGCTCGCGATTCGAAACTCGTGCCCCGTGTGTCGCCACGAGTTGCCTGTTGAAACCACACGCGCGGAGGTGGAGCGCGTGGAGGAGGAGGAGAACAACATGGGGTTGACGATATGGAGGTTACCGGGTGGCGGGTTTGCGGTGGGGAGGTTGGGAAGAAGAGGTGGTGAGAGAGAGGTTAATGTTCCTGTTGTGTACACGGAAGTGGATGGTGGGTTTAACAATGTTTTGGCTGAACCGAGGAGGGTTTCTTGGTCGATTTCAGAGTCTAGAGGAAGGGGAAGAGGTGGCGCGTTTAGGAGAATGTTTAACGGTTTGTTTCGTTGCTTGAGTTGTGGGGTTAGGCCTCAGCATTCTTCAGGTTCTACTTCCAGAACCGTGAGGGGTACTAGTAATGGTTCTTCTCGTCCTAACGCCGCTCCCTCTCCTCCGAATTCGCGTAGGACTTGGTCTATGGATGTCAACGGTGGAGCAAGACCATGGTAA 1143 0.5731 MSSLWCYGCNKFVRAWRQEMPVCPDCNSGFVEEVEHSNRSVQVEARRHRFPTAAAMYMIGHRPGNSDHNSRSSRRQHCHAAAAVEPLPLNPVIMLRGEGTSRERRSGSDSGFDLFFDDGAGSGLRPLPPRMSEFLLGTGFDRVMEQLSHVESNNGGARHNHRHTPAAKSVVESLPEVEINAGHMAMESHCAVCKEAFELYAKAKEMPCKHIYHSECILPWLAIRNSCPVCRHELPVETTRAEVERVEEEENNMGLTIWRLPGGGFAVGRLGRRGGEREVNVPVVYTEVDGGFNNVLAEPRRVSWSISESRGRGRGGAFRRMFNGLFRCLSCGVRPQHSSGSTSRTVRGTSNGSSRPNAAPSPPNSRRTWSMDVNGGARPW 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16538g00002 380 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Mupr16538g00002 380 MobiDBLite consensus disorder prediction 333 380 - -
Mupr16538g00002 380 Pfam Ring finger domain 189 231 IPR001841 -
Mupr16538g00002 380 SUPERFAMILY RING/U-box 170 237 - -
Mupr16538g00002 380 SMART ring_2 190 230 IPR001841 -
Mupr16538g00002 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 105 235 - -
Mupr16538g00002 380 FunFam E3 ubiquitin-protein ligase RING1-like 151 237 - -
Mupr16538g00002 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 237 IPR013083 -
Mupr16538g00002 380 Pfam Protein of unknown function (DUF1117) 253 346 IPR010543 -
Mupr16538g00002 380 Pfam zinc-ribbon 3 33 IPR039525 GO:0061630
Mupr16538g00002 380 MobiDBLite consensus disorder prediction 334 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16538g00002 Mupr-Chr16538 31725 32867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16538g00002 124 242 C3H Transcription Factor Family AT5G01980 39.496 4.90e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16538g00002 K11982 - gmx:100789228 496.893