Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16536g00002 ATGGTGAGAAAGAAGATACCGATAAAGAAGATCGACAACGTAACAGCGAGGCAGGTGACATTCTCAAAGAGGAGGAGTGGTCTTTTCAAGAAGGCACGTGAGCTCTCTATTCTTTGTGATGCTGAAATAGCTCTCATCGTCTTTTCACCTGGTGGCAAACTCTTCGACTATGCTAGTTCAAGTATGGAGAGCGTAACTGAAAGGCATAGTTCACGGTCAGAGCTTAACCTTGATAAATTAGGCCAGTCATGTGCTAAGGAGCAGGTATCAATTCAGCAGGTGGATAATAGAGAAATCTGTGATCATTGTCTTATGATGTTGGACCTCCTTAAGAATGAGGTATGTGAATTGATTTGTGAATATCATTGTCATACTAAGCTTCCAAATGGTGGTTTATCTTTGCTTATTGCCATGGTGCCTAAAATGAATAATACAATCCTTGAGTTTCAGTTGGCATCTCTGATTGGTAGTGTGGATAAAACCATATATCAACATCTTATCATTTGCTTAAAAAAGGTTGACTTCAAAAACACATACGACTCTATGAATTGGGTTTTTTTAGATTATATGTTACGTAGATTGGATTTTTGTGAGAAGTGTAGAACTTGGATACGAGAATGTGTATTTTATGGGGCACCCTCTATTCTTGTTAATCGTTGCCCAATACAGGAGACTCCTATGTTTAGAGGTTTAAAGCAGGGAGATCCCTTGTCTCCTTTTCTTTTTTCATTGTTGCTTAGGGTTAGACGTAATTATGCTGATTTGAACAGGGAATTAGGAGAAAAGACTCATGAAATAAGACAACTGAATGGAGAAGAACTGCAAGGATTGACCCTAAAGGAATTACAGAAACTAGAAGATCGACTTGACTCATCCTTGAACCATGTTTATAAAGCGAAGGGAAACAAGCTCATGGAAGAAAACCGGCGATTAAAACAGATAAAACCTAGGAATGAAATATGTTTAGTCCAGAGACATGAGCATGAACAAGGCACTTCCGACACCTCCCTCACATTGGGATCACCATAA 1029 0.3897 MVRKKIPIKKIDNVTARQVTFSKRRSGLFKKARELSILCDAEIALIVFSPGGKLFDYASSSMESVTERHSSRSELNLDKLGQSCAKEQVSIQQVDNREICDHCLMMLDLLKNEVCELICEYHCHTKLPNGGLSLLIAMVPKMNNTILEFQLASLIGSVDKTIYQHLIICLKKVDFKNTYDSMNWVFLDYMLRRLDFCEKCRTWIRECVFYGAPSILVNRCPIQETPMFRGLKQGDPLSPFLFSLLLRVRRNYADLNRELGEKTHEIRQLNGEELQGLTLKELQKLEDRLDSSLNHVYKAKGNKLMEENRRLKQIKPRNEICLVQRHEHEQGTSDTSLTLGSP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16536g00002 342 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr16536g00002 342 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 169 246 IPR000477 -
Mupr16536g00002 342 Coils Coil 245 272 - -
Mupr16536g00002 342 Pfam K-box region 248 313 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr16536g00002 342 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Mupr16536g00002 342 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr16536g00002 342 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mupr16536g00002 342 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 312 - -
Mupr16536g00002 342 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr16536g00002 342 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Mupr16536g00002 342 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr16536g00002 342 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr16536g00002 342 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr16536g00002 342 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr16536g00002 342 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Mupr16536g00002 342 ProSiteProfiles K-box domain profile. 245 334 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16536g00002 Mupr-Chr16536 9861 20768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16536g00002 251 313 MADS-box Gene Family AT2G22540 38.961 2.50e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr16536g00002 K-box 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16536g00002 - - gsj:114374895 153.68