Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16530g00004 ATGGGAAAATATGAGAAAGTGAGGGCAGAGTTGGGAATTTGCACAGCCCGGGGTGGGTCTTATTTAAACCATGGCCTCAACAAAACAAAACCCACCACCAAACATCGTTTCGGTTTGAGCAACCTATTAATAACGATGAACCAGCGCACGACGAAGAAGAAGAAGCAAACAACAACGACAGCAGAGCAGCAGAAAACGGCATGGGGAGGGAGGTACCTCGGGGTGAGGCGGAGGCCGTGGGGGAGGTACGCGGCGGAGATTCGCGACCCTTCGACGAAGGAGAGGCACTGGCTGGGCACCTTCGACACCGCCGACGAAGCCGCACTAGCCTACGACAGAGCCGCACGTGCCATGCGGGGCTCACGTGCGCGCACCAACTTCGTCTACGCCGACACCACACCGGGCTCTTCCCTCACCCCTATCCTTTCCCCCGATCAACAACAACCCCTCCCTCAACCCGACCCGTTTCTAACCCTCCATCCCTTTTCCCTCCTCGAGATTCCCTCCGGTTATGCTTCTGCCAGCGTGGCAACTTCCCCGTTCACCCAACAAGTCTTTTTAGCGGATAATAATAATAATAATAATAATAATAATAATAATAATAATGATAATAATAGTGGTAGTTCCATAGAGCTTCCTCCTTTGCCACCAGATATTACTAGCTCCATGGGTTATGAAACGGAACAGGGTAATGGATTTTATTTTAATAACAACGACGGTTATTATTTGGAGCACAACGCCGGGGGTGATTACTTGCCAACAGTGTCAGAGAATGTGCCTGCGGGGTCTCAAGGTTACCATAAAAGGAAACGTATAGAGTTCTCTACTACATATGTTACTAAATAA 846 0.4965 MGKYEKVRAELGICTARGGSYLNHGLNKTKPTTKHRFGLSNLLITMNQRTTKKKKQTTTTAEQQKTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTTPGSSLTPILSPDQQQPLPQPDPFLTLHPFSLLEIPSGYASASVATSPFTQQVFLADNNNNNNNNNNNNNDNNSGSSIELPPLPPDITSSMGYETEQGNGFYFNNNDGYYLEHNAGGDYLPTVSENVPAGSQGYHKRKRIEFSTTYVTK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16530g00004 281 CDD AP2 71 127 IPR001471 GO:0003700|GO:0006355
Mupr16530g00004 281 MobiDBLite consensus disorder prediction 187 215 - -
Mupr16530g00004 281 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Mupr16530g00004 281 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Mupr16530g00004 281 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 54 220 - -
Mupr16530g00004 281 MobiDBLite consensus disorder prediction 187 211 - -
Mupr16530g00004 281 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Mupr16530g00004 281 Gene3D AP2/ERF domain 70 129 IPR036955 GO:0003700|GO:0006355
Mupr16530g00004 281 FunFam Ethylene-responsive transcription factor 2 71 129 - -
Mupr16530g00004 281 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Mupr16530g00004 281 SUPERFAMILY DNA-binding domain 71 128 IPR016177 GO:0003677
Mupr16530g00004 281 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16530g00004 Mupr-Chr16530 9415 10915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16530g00004 46 262 AP2-EREBP Transcription Factor Family AT5G13910 46.818 4.44e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mupr16530g00004 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16530g00004 K09286 - gmx:100792421 237.654