Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr16492g00001 | ATGGACTTCGACGAGTACGATTACTTGGAAAAGACAGTGGAGGAGCAAGAGGACCGGGACTCCAGCAGGAAAAAGAAGGAGAGCGGCGACAAGAGCGAACGGAGCTACAGGAAGCGCGAGGAGATCGACGACGGAACCGATGAAAGGAAGAGTAAAAGGTCGAAGGGCGACGATGAGAATGGCTCCAAAAAGGATAAAGATCGTGTTCGCGACAAGGAGCGTCACAGGAGTAGCAGGGACAGGGACAGGGACAGGGATGGTGAGAGAAGTAGCAGAGACAGAGACAGAGACAGGGACAGGGAGAAGGAAAGGGATAAAGAGAGGGATCGGAGGGACAGAGACAAAGAGAGGGAAAAAAAGGAAAGGGATAGAGACAGAGAAAGAAGGGAGAAAGACCGGGATGAGAGAGAGAGGTCCCGAAGGAGTAGGAGTCGTTCTGAGCGAGATAGAGATAGAGAAAGAGAACGAGAGCGAGATTTCGACATCAGAGATAACAGGAGATTTAGGGACAAGAAAGAAGCAGCGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCGTTGAAGGCATCAGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGAAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTAGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACTAGTGGAGCTGCTGGGATAGTAGGACCATATGGTGCTGTGGATAGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCGGTGGAGCTTGTCCAACTGCCCCTGGACTTGGAGACTGGACATTGCAAGGGCTTTGGATTTGTTCAATTTGCCCATCTCGAGCATGCCAAGGCTGCCCAGAGTTTAAACGGGAAATTGGAAATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGATTTTGATGACGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGACCGCTCTGGCATTGCTGCAAGCATTGGTCTGCCCATTGGGAATGGGTCAGCTCCTGCTCAACAGGCTATTATGCCTATTGGTAATCCAGGTATAATACCAGCACCAGCTGTCCCTACACAAATTATGCCTACCCCAGTGACTGAACCTGTTGGGAACCCCAGTGAGTGTTTACTGTTGAAGAATATGTTTGATCCAAACACTGAGCCAGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCCAGATATGGACGGGTGAAGCATATCTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACACGAGGTGGTTTGCAGGCAGAATGATTTCTGCTATCTTCATGCAACCTCAGATATATGAAGCCAAGTTTAAAGGGGACGCGTGA | 1656 | 0.471 | MDFDEYDYLEKTVEEQEDRDSSRKKKESGDKSERSYRKREEIDDGTDERKSKRSKGDDENGSKKDKDRVRDKERHRSSRDRDRDRDGERSSRDRDRDRDREKERDKERDRRDRDKEREKKERDRDRERREKDRDERERSRRSRSRSERDRDRERERERDFDIRDNRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGIVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPIGNGSAPAQQAIMPIGNPGIIPAPAVPTQIMPTPVTEPVGNPSECLLLKNMFDPNTEPEPDFDLDIKEDVEEECSRYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIFMQPQIYEAKFKGDA | 551 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr16492g00001 | 551 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 547 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Mupr16492g00001 | 551 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 381 | 475 | IPR029123 | - | |
| Mupr16492g00001 | 551 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 288 | 366 | IPR000504 | GO:0003723 | |
| Mupr16492g00001 | 551 | CDD | RRM3_RBM39_like | 456 | 538 | - | - | |
| Mupr16492g00001 | 551 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 462 | 540 | IPR000504 | GO:0003723 | |
| Mupr16492g00001 | 551 | NCBIfam | splicing factor, CC1-like family | 68 | 547 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Mupr16492g00001 | 551 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 186 | 263 | IPR000504 | GO:0003723 | |
| Mupr16492g00001 | 551 | Coils | Coil | 115 | 137 | - | - | |
| Mupr16492g00001 | 551 | FunFam | Splicing factor CC1-like | 109 | 271 | - | - | |
| Mupr16492g00001 | 551 | Gene3D | - | 453 | 550 | IPR012677 | - | |
| Mupr16492g00001 | 551 | SMART | rrm1_1 | 458 | 536 | IPR000504 | GO:0003723 | |
| Mupr16492g00001 | 551 | SMART | rrm1_1 | 187 | 259 | IPR000504 | GO:0003723 | |
| Mupr16492g00001 | 551 | SMART | rrm1_1 | 289 | 362 | IPR000504 | GO:0003723 | |
| Mupr16492g00001 | 551 | Gene3D | - | 284 | 380 | IPR012677 | - | |
| Mupr16492g00001 | 551 | Gene3D | - | 179 | 272 | IPR012677 | - | |
| Mupr16492g00001 | 551 | SUPERFAMILY | RNA-binding domain, RBD | 179 | 266 | IPR035979 | GO:0003676 | |
| Mupr16492g00001 | 551 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 480 | 533 | IPR000504 | GO:0003723 | |
| Mupr16492g00001 | 551 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 290 | 360 | IPR000504 | GO:0003723 | |
| Mupr16492g00001 | 551 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 194 | 255 | IPR000504 | GO:0003723 | |
| Mupr16492g00001 | 551 | SUPERFAMILY | RNA-binding domain, RBD | 454 | 538 | IPR035979 | GO:0003676 | |
| Mupr16492g00001 | 551 | FunFam | Splicing factor, CC1-like protein | 452 | 551 | - | - | |
| Mupr16492g00001 | 551 | SUPERFAMILY | RNA-binding domain, RBD | 287 | 365 | IPR035979 | GO:0003676 | |
| Mupr16492g00001 | 551 | CDD | RRM1_RBM39_like | 187 | 259 | - | - | |
| Mupr16492g00001 | 551 | FunFam | Splicing factor CC1-like | 272 | 377 | - | - | |
| Mupr16492g00001 | 551 | CDD | RRM2_RBM23_RBM39 | 290 | 367 | - | - | |
| Mupr16492g00001 | 551 | MobiDBLite | consensus disorder prediction | 1 | 156 | - | - | |
| Mupr16492g00001 | 551 | MobiDBLite | consensus disorder prediction | 12 | 156 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr16492g00001 | Mupr-Chr16492 | 1553 | 8772 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr16492g00001 | 260 | 361 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.922 | 8.21e-08 | 53.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr16492g00001 | K13091 | - | gmx:100802446 | 732.25 |