Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16466g00001 ATGTCAGATGTGGAAGAGTACCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTCACATTTGATGAAAAGAAAGCAATGGAAGAAGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACTATTACTGTTGATAGAGCTCAACCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCGGGAGCGTGGGCGTGATCGTGATCGTGATCGTAACCGAGATTATGGGGGTGGAGGTGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTAGTGAAGGGGGCAGAGGAGGAAGGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGTAGTGCTGGTGGTCACTATGGTCCGGATAGAAATGCAGATCGTTCTTCAGGTGGGCGCAACAGGGATGCTGGTAATCATGGAGATTCTGGAAATGATCGATATTATCGTGATCGTGCAGGACCATATGAGCGACGGGGATCGGGAGGCTTTCGTTGA 636 0.4686 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRDRNRDYGGGGGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGRESRYGGSSAGGHYGPDRNADRSSGGRNRDAGNHGDSGNDRYYRDRAGPYERRGSGGFR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16466g00001 211 Gene3D - 123 181 - -
Mupr16466g00001 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Mupr16466g00001 211 SUPERFAMILY Retrovirus zinc finger-like domains 109 147 IPR036875 GO:0003676|GO:0008270
Mupr16466g00001 211 CDD RRM2_NsCP33_like 8 83 - -
Mupr16466g00001 211 SMART rrm1_1 8 81 IPR000504 GO:0003723
Mupr16466g00001 211 MobiDBLite consensus disorder prediction 172 204 - -
Mupr16466g00001 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mupr16466g00001 211 Pfam Zinc knuckle 126 142 IPR001878 GO:0003676|GO:0008270
Mupr16466g00001 211 MobiDBLite consensus disorder prediction 88 113 - -
Mupr16466g00001 211 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 208 - -
Mupr16466g00001 211 ProSiteProfiles Zinc finger CCHC-type profile. 127 142 IPR001878 GO:0003676|GO:0008270
Mupr16466g00001 211 MobiDBLite consensus disorder prediction 76 211 - -
Mupr16466g00001 211 FunFam Glycine-rich RNA-binding protein 10 123 181 - -
Mupr16466g00001 211 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Mupr16466g00001 211 SMART c2hcfinal6 126 142 IPR001878 GO:0003676|GO:0008270
Mupr16466g00001 211 Gene3D - 2 122 IPR012677 -
Mupr16466g00001 211 FunFam Glycine-rich RNA-binding protein RZ1A 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16466g00001 Mupr-Chr16466 5803 6861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16466g00001 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 38.158 4.25e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16466g00001 - - gmx:100815224 320.472