Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1643g00007 ATGGTGCGTGTTGGATCCCTCTTCTATCATCTCCGTAACATGTTTTGTTATTTTGCAGAAATTGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGGAAAACTGATTACCGAGCTAGGATTCGGTTGATTAATCAGGATAAGAACAAGTACAACACACCAAAATACCGCTTTGTGACCAACAAGGACATTATTGCCCAAATAATATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCAGCGTATTCACATGAGCTGCCACACTATGGTCTTGAAGTAGGCCTTACAAACTATGCTGCAGCTTACTGCACTGGACTCTTGTTGGCCCGTCGAGTGCTTAAACATCTTGAAATGGACGAGGAGTATGAGGGAAATGTTGAGGCCACTGGAGAGGATTTTTCAGTTGAACCTGCTGAGAGTAGGAGGCCGTTCCGAGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACTGGCAACTGTGTCTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCCCACAGTGACAAAAGGTTTGCTGGCTTTGATAAGGAGAAGAAGGAGCTTGATGCCGAGATCTTGATTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATATATCAAGCGTGGAATAGAGCCTGATGGTCTGGAGGAGCTGTACAAGAAAGTTCATGCTGCCATCCGTGCTGATCCTACTTCCAAGAAATCTGAGAAACAGCCTCCAAAGGAGCACAAGAGGTACAACCTGAAGAAACTTACTTATGAGGAGAGAAAGGCCAAGTTGATTGCTCGCTTGCAGGCTCTCAACTCTGCCGCTGCAGATGATGACGAGGATGATGAAGTACATGTGTTCGTTACCATAAAATCAGCTTTTGTTAACGCGTTATCCTAA 951 0.4458 MVRVGSLFYHLRNMFCYFAEIVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVTNKDIIAQIISASIAGDIVLAAAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKHLEMDEEYEGNVEATGEDFSVEPAESRRPFRALLDVGLIRTTTGNCVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEILIEDEPEKYQSHFSEYIKRGIEPDGLEELYKKVHAAIRADPTSKKSEKQPPKEHKRYNLKKLTYEERKAKLIARLQALNSAAADDDEDDEVHVFVTIKSAFVNALS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1643g00007 316 SUPERFAMILY Translational machinery components 31 252 - -
Mupr1643g00007 316 Gene3D - 21 292 - -
Mupr1643g00007 316 PRINTS Ribosomal protein L5 signature 161 180 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr1643g00007 316 PRINTS Ribosomal protein L5 signature 101 121 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr1643g00007 316 PRINTS Ribosomal protein L5 signature 181 200 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr1643g00007 316 PRINTS Ribosomal protein L5 signature 40 59 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr1643g00007 316 Pfam Ribosomal L18 C-terminal region 236 289 IPR025607 -
Mupr1643g00007 316 Hamap 50S ribosomal protein L18 [rplR]. 34 247 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr1643g00007 316 Coils Coil 271 291 - -
Mupr1643g00007 316 CDD Ribosomal_L18_L5e 88 187 - -
Mupr1643g00007 316 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 34 192 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr1643g00007 316 PANTHER RIBOSOMAL PROTEIN L5-RELATED 22 292 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr1643g00007 316 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1643g00007 Mupr-Chr1643 45883 48258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1643g00007 21 293 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 77.740 6.08e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1643g00007 K02932 - gmx:100805868 484.182