Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16396g00001 ATGAATTGGGTTCACTCTCAAATCTGTCATAGCAATGATGCTATCAACAACCCCACTAGTATTTCCCCTTGTTCATCTTCATCTTCCTCTTCCTCTTGTTGTTGTTGTTCTTCTGCATCATTGCCTTACAGTTCTGAGTACAAGAAGCAATTACCCCCTCCTCTAGCTTCTTCATCTGGCACCAGAATAAGCCCTGCAATTGTCTTCATCTTTGTGATTATAGCTATTGTGTTTTTCATCTCTGGCATCCTCCACCTGCTTGTAAGATTCCTCATAAGGCAGAGGTCCTCTTCATCAATTTCCCAGTCCAACAGGTACCCTGACATGTCTGAATCTGATCCTTACCAGAGGCAGCTGCAACAGCTCTTCCACCTCCATGATTCAGGCCTAGATCAGGCCTTCATAGATGCCCTCCCAGTTTTCCTCTACAAAGACATAATAGGTTTGAAGGAGCCATTTGACTGTGCAGTGTGCCTTTGCCAGTTCTCAGAGCAAGACATGCTCAGGCTGCTGCCCCTTTGCAACCATGCTTTCCACATTGACTGCATAGACACATGGCTGCTGTCAAATTCAACCTGTCCTCTCTGCAGAGGGAGTCTCTATGAGCCAGGCTTTGCCTTTGAAAACCCAGTTTATGACCTTGAGGGCCTCAGGGAGGAAGATGGGGTTTCAGGGAGTGTTCCTGGTGAGGCTTCTTGTGTCAACAAGCATGCAGAAAACCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGCAAGTTTAGAAGCTCAAATAATGGAGAGGGGGTGGAAAGAGGTGGGGAGAGCAGTACTAGTAATTTGGATGTTAGGAGATGCTATTCAATGGGATCATTTCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTATGCCCCAATAGAGGTGATGATGCTGGAGGTGCCAGCGGTATGAGACAATTCAAAGGGAGATTGGCCCATTATGGGAATTCTTCTTCCACTGATGGGGGGGATGTTGAGGGCAAAAAAATCAACATTGCTAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAGGACAAGGTTTCAAGTTCACCAGAAAACCATTTCGGGGGTTCTAATGTCACTGCAGCTTTGCCATGGATGAATAGAGTTCAAGGTGAGATGATGGTGTCTAATTTAAGATGGCCAAAGTCTTCAAATTCAAAGATGTAG 1218 0.454 MNWVHSQICHSNDAINNPTSISPCSSSSSSSSCCCCSSASLPYSSEYKKQLPPPLASSSGTRISPAIVFIFVIIAIVFFISGILHLLVRFLIRQRSSSSISQSNRYPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPVYDLEGLREEDGVSGSVPGEASCVNKHAENHIMSGKRVFSVRLGKFRSSNNGEGVERGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNRGDDAGGASGMRQFKGRLAHYGNSSSTDGGDVEGKKINIARKGESFSVSKIWQWSRKDKVSSSPENHFGGSNVTAALPWMNRVQGEMMVSNLRWPKSSNSKM 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16396g00001 405 SUPERFAMILY RING/U-box 134 203 - -
Mupr16396g00001 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 58 355 - -
Mupr16396g00001 405 SMART ring_2 155 196 IPR001841 -
Mupr16396g00001 405 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Mupr16396g00001 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 202 IPR013083 -
Mupr16396g00001 405 Pfam Ring finger domain 154 197 IPR001841 -
Mupr16396g00001 405 FunFam RING-H2 finger protein ATL46 117 202 - -
Mupr16396g00001 405 CDD RING-H2_EL5-like 154 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16396g00001 Mupr-Chr16396 1833 4204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16396g00001 57 362 C3H Transcription Factor Family AT2G18650 40.413 4.63e-54 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16396g00001 - - gmx:100818135 612.453