Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1638g00001 ATGCAAGAGGCGGGATTGGGAATGATGAGTGGAGAAATGTCAGCCGCCGGCGACCACCACCACCACCACCAGCAGCGTCAAGTGAAGGCGGAGATAGCCACCCACCCACTTTATGAACAGGTTCTGGCTGCACACGTGTCGTGCCTCCGCGTGGCCACACCCATCGATCAGTTGCCACTGATCGACGCTCAGTTATCGCAGTCTCACCATCTCCTCCGCTCTTACGCCTCACACCATTCTCATTCCCTCTTACCTCATGACCGACAAGAACTCGACAACTTCATGGCCCAATATTTGATTGTGTTGTGTACGTTCAAAGAGCAGCTTCAGCAACATGTCAGGGTGCATGCCGTGGAGGCTGTCATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTGACAGGAGTCAGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGATTTGCAGATGGATGTCTCTTTGGATCAGTCCAGCGCTGACGGGCATGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTGATGGAAAGAGTTCGTCAGGAACTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTCAGGGAGGAAATATTAAGGAAACGGAGAGCTGGGAAATTACCAGGTGACACAACATCGGTTTTAAAGGCCTGGTGGCAGCAACATGCTAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTTTGAAATCCAAGCGCAAGAGAGAGTATTCCCACTAA 882 0.4943 MQEAGLGMMSGEMSAAGDHHHHHQQRQVKAEIATHPLYEQVLAAHVSCLRVATPIDQLPLIDAQLSQSHHLLRSYASHHSHSLLPHDRQELDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGTGATMSDDEDDLQMDVSLDQSSADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKREYSH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1638g00001 293 SMART HOX_1 214 279 IPR001356 GO:0003677
Mupr1638g00001 293 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Mupr1638g00001 293 Pfam KNOX1 domain 28 69 IPR005540 GO:0003677|GO:0005634
Mupr1638g00001 293 FunFam homeobox protein knotted-1-like 3 isoform X1 213 274 - -
Mupr1638g00001 293 Pfam KNOX2 domain 85 135 IPR005541 GO:0003677|GO:0005634
Mupr1638g00001 293 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Mupr1638g00001 293 SMART KNOX2_2 81 136 IPR005541 GO:0003677|GO:0005634
Mupr1638g00001 293 MobiDBLite consensus disorder prediction 1 29 - -
Mupr1638g00001 293 Gene3D - 211 286 - -
Mupr1638g00001 293 SUPERFAMILY Homeodomain-like 214 279 IPR009057 -
Mupr1638g00001 293 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Mupr1638g00001 293 CDD homeodomain 215 276 IPR001356 GO:0003677
Mupr1638g00001 293 MobiDBLite consensus disorder prediction 15 29 - -
Mupr1638g00001 293 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Mupr1638g00001 293 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1638g00001 Mupr-Chr1638 2083 7796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1638g00001 1 288 Homeobox Transcription Factor Family AT1G62990 78.767 1.81e-170 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr1638g00001 KNOX2 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1638g00001 - - gmx:100803130 565.074