Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16380g00004 ATGGACTTTGTTTCGCCACAGCTACATCCTGAAAGTCCCTTTGACATTTACTACCCCTTGTTGATGGCGCGCCCCACTCACCATGTCATTGACATCACGGGGAGTTCTGGACCTTCCACTTCTTCTTCTTCCAATCCCAATGGTGCCAATGATGTGGATATTGGTGCTTTGAATTCTAGGATTAGGCGGCGAGGGGATAGCACTCGAAGTAGGCATAGGAGTCCGTTGAATTCGGGGTTGTGGATATGCATTGAGTTAGTGGTCACCGTGAGCCAGATTGTTGCCTCTGTTGTTGTTCTGTGTTTGTCAAAGCATGAGCATCCGCGTACCCCGTTGTTCGCATGGATTGTTGGGTATGCGTCCGGGTGTGTGGCTACCCTCCCTCTTCTTTACTGGCGGTATTATCATAATTGCTTGGAGCAGGACTCGTCTCAGGCCTCTCCCAGGAGTAATGATCCTTCAGGTATGCTTCTTTCCAATTCCATGACAAATGGAGGGGAAGGCGTTCTGGCATCTTCCAGGAGCAATCAAGAGTCGGCGTGGTTGATGAATGCAAGATTGAAGCTACTCGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCCGCTGCTGAAGCGCCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGTATTGGTTATGCTATGCCCTTCATTTTATGTGCAACAATTTGCTGCTGTCTGCCTTGTATAATTTCCGTCCTTGGGATTAGAGAGGATATGGCACAAACCCGAGGTGCGTCCTCTGATTTGATTAATGCTCTGCCGACTTATAAGTTCAAAATGAAGAAAACTAGAAGCAAAGGGGAAAGCAACTCAGCTGTTGGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAGCGTATGATCTCTGGAGATGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGACCTGAGAGAATTGCCTTGTTCTCATCTTTTTCACAAAGACTGTGTGGACAAGTGGTTGAAGATAAATGCTTTATGCCCCCTTTGCAAGAGTGGGGTTGGTGAGAACGTAACAAGATCAGCAGTCTCTGGGGAAGATGCCGACCAACATCAGGGTGAAAGCAGGGTTGAGAATGGCCTCCCCAATACCTCCTCATCGGTGGATCGTTCCCAACAAAATGTTCTTCTATATACATAG 1245 0.4618 MDFVSPQLHPESPFDIYYPLLMARPTHHVIDITGSSGPSTSSSSNPNGANDVDIGALNSRIRRRGDSTRSRHRSPLNSGLWICIELVVTVSQIVASVVVLCLSKHEHPRTPLFAWIVGYASGCVATLPLLYWRYYHNCLEQDSSQASPRSNDPSGMLLSNSMTNGGEGVLASSRSNQESAWLMNARLKLLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSAAEAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDMAQTRGASSDLINALPTYKFKMKKTRSKGESNSAVGEGGVVAAGTEKERMISGDDAVCCICLAKYENNDDLRELPCSHLFHKDCVDKWLKINALCPLCKSGVGENVTRSAVSGEDADQHQGESRVENGLPNTSSSVDRSQQNVLLYT 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16380g00004 414 MobiDBLite consensus disorder prediction 376 414 - -
Mupr16380g00004 414 SUPERFAMILY RING/U-box 317 371 - -
Mupr16380g00004 414 SMART ring_2 325 365 IPR001841 -
Mupr16380g00004 414 FunFam E3 ubiquitin-protein ligase 308 375 - -
Mupr16380g00004 414 ProSiteProfiles Zinc finger RING-type profile. 325 366 IPR001841 -
Mupr16380g00004 414 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 26 369 - -
Mupr16380g00004 414 MobiDBLite consensus disorder prediction 391 414 - -
Mupr16380g00004 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 374 IPR013083 -
Mupr16380g00004 414 MobiDBLite consensus disorder prediction 32 73 - -
Mupr16380g00004 414 Pfam Ring finger domain 325 366 IPR001841 -
Mupr16380g00004 414 CDD RING-H2_PA-TM-RING 324 366 - -
Mupr16380g00004 414 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16380g00004 Mupr-Chr16380 16081 19649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16380g00004 63 377 C3H Transcription Factor Family AT1G80400 59.692 6.01e-138 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16380g00004 - - gmx:100795904 650.973